Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13095 and CA264_13100 are separated by 943 nucleotides CA264_13100 and CA264_13105 overlap by 4 nucleotides
CA264_13095: CA264_13095 - cobalamin-binding protein, at 3,053,847 to 3,054,620
_13095
CA264_13100: CA264_13100 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,055,564 to 3,056,796
_13100
CA264_13105: CA264_13105 - 3-dehydroquinate synthase, at 3,056,793 to 3,057,830
_13105
Position (kb)
3055
3056
3057 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3054.566 kb on - strand at 3054.618 kb on + strand at 3054.618 kb on + strand at 3054.618 kb on + strand at 3054.638 kb on + strand at 3054.638 kb on + strand at 3054.638 kb on + strand at 3054.639 kb on - strand at 3054.639 kb on - strand at 3054.692 kb on + strand at 3054.700 kb on + strand at 3054.719 kb on - strand at 3054.719 kb on - strand at 3054.721 kb on - strand at 3054.721 kb on - strand at 3054.749 kb on + strand at 3054.751 kb on + strand at 3054.811 kb on + strand at 3054.812 kb on - strand at 3054.823 kb on + strand at 3054.887 kb on + strand at 3054.888 kb on - strand at 3054.908 kb on - strand at 3054.922 kb on + strand at 3054.923 kb on - strand at 3054.931 kb on + strand at 3055.072 kb on + strand at 3055.155 kb on + strand at 3055.164 kb on + strand at 3055.164 kb on + strand at 3055.164 kb on + strand at 3055.165 kb on - strand at 3055.165 kb on - strand at 3055.189 kb on - strand at 3055.196 kb on - strand at 3055.206 kb on - strand at 3055.238 kb on + strand at 3055.238 kb on + strand at 3055.239 kb on - strand at 3055.294 kb on - strand at 3055.330 kb on - strand at 3055.330 kb on - strand at 3055.330 kb on - strand at 3055.335 kb on + strand at 3055.335 kb on + strand at 3055.336 kb on - strand at 3055.402 kb on - strand at 3055.413 kb on - strand at 3055.413 kb on - strand at 3055.414 kb on + strand at 3055.414 kb on + strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.418 kb on + strand at 3055.435 kb on - strand at 3055.454 kb on - strand at 3055.456 kb on + strand at 3055.456 kb on + strand at 3055.457 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.462 kb on - strand at 3055.566 kb on - strand at 3055.566 kb on - strand at 3055.578 kb on + strand at 3055.579 kb on - strand at 3055.747 kb on + strand, within CA264_13100 at 3056.796 kb on + strand at 3056.796 kb on + strand at 3056.797 kb on - strand at 3056.797 kb on - strand at 3056.799 kb on + strand at 3056.799 kb on + strand at 3056.799 kb on + strand at 3056.800 kb on - strand at 3056.806 kb on + strand at 3056.806 kb on + strand at 3056.806 kb on + strand at 3056.807 kb on - strand at 3056.810 kb on - strand at 3056.810 kb on - strand at 3057.422 kb on + strand, within CA264_13105
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,054,566 - +0.3 3,054,618 + +0.1 3,054,618 + +1.0 3,054,618 + -0.2 3,054,638 + +0.8 3,054,638 + +1.3 3,054,638 + -0.8 3,054,639 - +0.5 3,054,639 - -0.1 3,054,692 + +0.3 3,054,700 + -0.4 3,054,719 - +0.2 3,054,719 - +0.8 3,054,721 - -0.4 3,054,721 - -0.3 3,054,749 + -2.6 3,054,751 + +0.4 3,054,811 + -2.5 3,054,812 - -0.1 3,054,823 + +0.3 3,054,887 + -0.8 3,054,888 - -0.0 3,054,908 - +0.3 3,054,922 + +0.4 3,054,923 - +1.2 3,054,931 + -0.1 3,055,072 + -0.1 3,055,155 + +0.8 3,055,164 + +0.2 3,055,164 + -0.1 3,055,164 + +0.7 3,055,165 - -1.6 3,055,165 - -1.1 3,055,189 - -0.7 3,055,196 - +0.2 3,055,206 - +1.7 3,055,238 + -0.5 3,055,238 + -0.9 3,055,239 - -0.6 3,055,294 - -0.0 3,055,330 - -0.8 3,055,330 - -1.7 3,055,330 - -0.2 3,055,335 + -0.6 3,055,335 + -0.7 3,055,336 - -0.6 3,055,402 - -0.7 3,055,413 - -0.3 3,055,413 - +0.2 3,055,414 + +0.6 3,055,414 + -0.2 3,055,415 - -2.4 3,055,415 - +1.1 3,055,415 - +0.0 3,055,415 - +0.4 3,055,415 - -1.9 3,055,418 + -0.6 3,055,435 - +0.4 3,055,454 - -1.2 3,055,456 + +1.9 3,055,456 + +0.7 3,055,457 - -0.2 3,055,459 - -0.0 3,055,459 - -0.4 3,055,459 - +0.4 3,055,459 - -0.2 3,055,462 - +0.2 3,055,566 - -0.8 3,055,566 - -0.1 3,055,578 + -1.2 3,055,579 - -0.2 3,055,747 + CA264_13100 0.15 -1.4 3,056,796 + -0.1 3,056,796 + -1.5 3,056,797 - -0.1 3,056,797 - +2.1 3,056,799 + +0.1 3,056,799 + -2.7 3,056,799 + -3.0 3,056,800 - -1.9 3,056,806 + +2.4 3,056,806 + -0.0 3,056,806 + -1.3 3,056,807 - -0.6 3,056,810 - -1.4 3,056,810 - -0.5 3,057,422 + CA264_13105 0.61 -0.6
Or see this region's nucleotide sequence