Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13060

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13055 and CA264_13060 are separated by 388 nucleotidesCA264_13060 and CA264_13065 are separated by 117 nucleotides CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450 _13055 CA264_13060: CA264_13060 - tRNA-Ser, at 3,045,839 to 3,045,926 _13060 CA264_13065: CA264_13065 - DUF4153 domain-containing protein, at 3,046,044 to 3,047,912 _13065 Position (kb) 3045 3046Strain fitness (log2 ratio) -2 -1 0 1 2at 3044.906 kb on - strand, within CA264_13055at 3044.920 kb on - strand, within CA264_13055at 3044.920 kb on - strand, within CA264_13055at 3044.925 kb on + strand, within CA264_13055at 3044.925 kb on + strand, within CA264_13055at 3044.926 kb on - strand, within CA264_13055at 3044.936 kb on + strand, within CA264_13055at 3044.937 kb on - strand, within CA264_13055at 3044.937 kb on - strand, within CA264_13055at 3044.951 kb on + strand, within CA264_13055at 3044.995 kb on - strand, within CA264_13055at 3045.152 kb on + strand, within CA264_13055at 3045.277 kb on + strandat 3045.309 kb on + strandat 3045.310 kb on - strandat 3045.312 kb on - strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.317 kb on - strandat 3045.317 kb on - strandat 3045.351 kb on + strandat 3045.412 kb on - strandat 3045.479 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.504 kb on - strandat 3045.504 kb on - strandat 3045.543 kb on - strandat 3045.588 kb on - strandat 3045.641 kb on - strandat 3045.681 kb on + strandat 3045.681 kb on + strandat 3045.689 kb on + strandat 3045.828 kb on + strandat 3045.999 kb on + strandat 3046.000 kb on - strandat 3046.108 kb on + strandat 3046.131 kb on + strandat 3046.186 kb on - strandat 3046.186 kb on - strandat 3046.243 kb on - strand, within CA264_13065at 3046.267 kb on + strand, within CA264_13065at 3046.274 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.444 kb on + strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065at 3046.492 kb on - strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.568 kb on + strand, within CA264_13065at 3046.820 kb on + strand, within CA264_13065at 3046.820 kb on + strand, within CA264_13065at 3046.827 kb on + strand, within CA264_13065at 3046.829 kb on + strand, within CA264_13065at 3046.830 kb on - strand, within CA264_13065at 3046.910 kb on - strand, within CA264_13065at 3046.910 kb on - strand, within CA264_13065

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,044,906 - CA264_13055 0.74 +0.3
3,044,920 - CA264_13055 0.75 -0.2
3,044,920 - CA264_13055 0.75 -0.1
3,044,925 + CA264_13055 0.75 -0.0
3,044,925 + CA264_13055 0.75 -1.2
3,044,926 - CA264_13055 0.75 +0.9
3,044,936 + CA264_13055 0.76 -1.3
3,044,937 - CA264_13055 0.76 +1.1
3,044,937 - CA264_13055 0.76 -0.3
3,044,951 + CA264_13055 0.77 -0.3
3,044,995 - CA264_13055 0.79 -0.9
3,045,152 + CA264_13055 0.86 -0.6
3,045,277 + +0.5
3,045,309 + -0.6
3,045,310 - -0.4
3,045,312 - +1.8
3,045,316 + -0.4
3,045,316 + -0.1
3,045,316 + +0.8
3,045,317 - +0.0
3,045,317 - +0.4
3,045,351 + -2.5
3,045,412 - -0.8
3,045,479 - +0.3
3,045,502 - -0.3
3,045,502 - +0.5
3,045,502 - +1.2
3,045,504 - +1.4
3,045,504 - +1.4
3,045,543 - -1.8
3,045,588 - +0.7
3,045,641 - +1.7
3,045,681 + +0.2
3,045,681 + -0.4
3,045,689 + +0.8
3,045,828 + +0.1
3,045,999 + +0.5
3,046,000 - +0.1
3,046,108 + -0.3
3,046,131 + -0.7
3,046,186 - +0.3
3,046,186 - +1.1
3,046,243 - CA264_13065 0.11 -0.7
3,046,267 + CA264_13065 0.12 -0.3
3,046,274 + CA264_13065 0.12 -0.6
3,046,322 + CA264_13065 0.15 +0.8
3,046,322 + CA264_13065 0.15 +0.5
3,046,323 - CA264_13065 0.15 -0.3
3,046,323 - CA264_13065 0.15 +2.1
3,046,323 - CA264_13065 0.15 +0.3
3,046,323 - CA264_13065 0.15 +0.2
3,046,325 - CA264_13065 0.15 +0.3
3,046,325 - CA264_13065 0.15 -0.6
3,046,350 + CA264_13065 0.16 +0.7
3,046,350 + CA264_13065 0.16 -1.5
3,046,351 - CA264_13065 0.16 -2.1
3,046,351 - CA264_13065 0.16 -0.6
3,046,444 + CA264_13065 0.21 -1.3
3,046,445 - CA264_13065 0.21 -1.1
3,046,445 - CA264_13065 0.21 +0.3
3,046,492 - CA264_13065 0.24 -0.2
3,046,563 + CA264_13065 0.28 -0.2
3,046,563 + CA264_13065 0.28 -0.6
3,046,563 + CA264_13065 0.28 -1.3
3,046,563 + CA264_13065 0.28 -0.1
3,046,563 + CA264_13065 0.28 +0.2
3,046,563 + CA264_13065 0.28 -0.4
3,046,563 + CA264_13065 0.28 -2.3
3,046,564 - CA264_13065 0.28 -1.3
3,046,564 - CA264_13065 0.28 -1.4
3,046,564 - CA264_13065 0.28 -0.0
3,046,565 + CA264_13065 0.28 -0.8
3,046,565 + CA264_13065 0.28 +0.1
3,046,565 + CA264_13065 0.28 -0.8
3,046,565 + CA264_13065 0.28 +0.2
3,046,565 + CA264_13065 0.28 -0.3
3,046,568 + CA264_13065 0.28 +0.9
3,046,820 + CA264_13065 0.42 +0.9
3,046,820 + CA264_13065 0.42 -2.2
3,046,827 + CA264_13065 0.42 +0.2
3,046,829 + CA264_13065 0.42 -1.2
3,046,830 - CA264_13065 0.42 -1.5
3,046,910 - CA264_13065 0.46 +1.6
3,046,910 - CA264_13065 0.46 -0.5

Or see this region's nucleotide sequence