Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11175 and CA264_11180 are separated by 385 nucleotides CA264_11180 and CA264_11185 overlap by 20 nucleotides CA264_11185 and CA264_11190 are separated by 289 nucleotides
CA264_11175: CA264_11175 - hypothetical protein, at 2,589,088 to 2,589,582
_11175
CA264_11180: CA264_11180 - thioredoxin family protein, at 2,589,968 to 2,590,525
_11180
CA264_11185: CA264_11185 - hypothetical protein, at 2,590,506 to 2,591,342
_11185
CA264_11190: CA264_11190 - peptidase M23, at 2,591,632 to 2,592,897
_11190
Position (kb)
2590
2591
2592 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2589.535 kb on + strand at 2589.536 kb on - strand at 2589.590 kb on + strand at 2589.677 kb on + strand at 2589.678 kb on - strand at 2589.711 kb on - strand at 2589.779 kb on - strand at 2589.779 kb on - strand at 2589.823 kb on - strand at 2589.829 kb on - strand at 2589.895 kb on + strand at 2589.896 kb on - strand at 2589.897 kb on + strand at 2589.919 kb on - strand at 2589.919 kb on - strand at 2589.927 kb on + strand at 2589.927 kb on + strand at 2589.928 kb on - strand at 2589.928 kb on - strand at 2589.928 kb on - strand at 2589.930 kb on + strand at 2589.930 kb on + strand at 2589.931 kb on - strand at 2589.937 kb on + strand at 2589.937 kb on + strand at 2589.937 kb on + strand at 2589.937 kb on + strand at 2589.938 kb on - strand at 2589.938 kb on - strand at 2589.938 kb on - strand at 2589.943 kb on - strand at 2589.943 kb on - strand at 2589.968 kb on - strand at 2590.065 kb on + strand, within CA264_11180 at 2590.115 kb on + strand, within CA264_11180 at 2590.115 kb on + strand, within CA264_11180 at 2590.116 kb on - strand, within CA264_11180 at 2590.119 kb on + strand, within CA264_11180 at 2590.120 kb on - strand, within CA264_11180 at 2590.120 kb on - strand, within CA264_11180 at 2590.236 kb on - strand, within CA264_11180 at 2590.236 kb on - strand, within CA264_11180 at 2590.313 kb on + strand, within CA264_11180 at 2590.327 kb on + strand, within CA264_11180 at 2590.328 kb on - strand, within CA264_11180 at 2590.328 kb on - strand, within CA264_11180 at 2590.370 kb on + strand, within CA264_11180 at 2590.371 kb on - strand, within CA264_11180 at 2590.402 kb on + strand, within CA264_11180 at 2590.418 kb on - strand, within CA264_11180 at 2590.609 kb on + strand, within CA264_11185 at 2590.619 kb on + strand, within CA264_11185 at 2590.620 kb on - strand, within CA264_11185 at 2590.620 kb on - strand, within CA264_11185 at 2590.620 kb on - strand, within CA264_11185 at 2590.621 kb on + strand, within CA264_11185 at 2590.621 kb on + strand, within CA264_11185 at 2590.621 kb on + strand, within CA264_11185 at 2590.621 kb on + strand, within CA264_11185 at 2590.621 kb on + strand, within CA264_11185 at 2590.622 kb on - strand, within CA264_11185 at 2590.641 kb on + strand, within CA264_11185 at 2590.641 kb on + strand, within CA264_11185 at 2590.641 kb on + strand, within CA264_11185 at 2590.641 kb on + strand, within CA264_11185 at 2590.641 kb on + strand, within CA264_11185 at 2590.642 kb on - strand, within CA264_11185 at 2590.645 kb on + strand, within CA264_11185 at 2590.812 kb on - strand, within CA264_11185 at 2590.861 kb on + strand, within CA264_11185 at 2590.862 kb on - strand, within CA264_11185 at 2590.862 kb on - strand, within CA264_11185 at 2590.865 kb on - strand, within CA264_11185 at 2590.865 kb on - strand, within CA264_11185 at 2590.882 kb on + strand, within CA264_11185 at 2590.904 kb on - strand, within CA264_11185 at 2590.904 kb on - strand, within CA264_11185 at 2590.969 kb on + strand, within CA264_11185 at 2590.969 kb on + strand, within CA264_11185 at 2590.969 kb on + strand, within CA264_11185 at 2590.970 kb on - strand, within CA264_11185 at 2590.970 kb on - strand, within CA264_11185 at 2590.979 kb on - strand, within CA264_11185 at 2591.039 kb on + strand, within CA264_11185 at 2591.059 kb on + strand, within CA264_11185 at 2591.098 kb on + strand, within CA264_11185 at 2591.098 kb on + strand, within CA264_11185 at 2591.098 kb on + strand, within CA264_11185 at 2591.099 kb on - strand, within CA264_11185 at 2591.099 kb on - strand, within CA264_11185 at 2591.167 kb on + strand, within CA264_11185 at 2591.168 kb on - strand, within CA264_11185 at 2591.204 kb on + strand, within CA264_11185 at 2591.206 kb on + strand, within CA264_11185 at 2591.206 kb on + strand, within CA264_11185 at 2591.244 kb on - strand, within CA264_11185 at 2591.244 kb on - strand, within CA264_11185 at 2591.283 kb on - strand at 2591.328 kb on + strand at 2591.334 kb on - strand at 2591.395 kb on + strand at 2591.468 kb on - strand at 2591.468 kb on - strand at 2591.503 kb on + strand at 2591.514 kb on + strand at 2591.514 kb on + strand at 2591.528 kb on - strand at 2591.528 kb on - strand at 2591.531 kb on - strand at 2591.548 kb on - strand at 2591.585 kb on + strand at 2591.675 kb on + strand at 2591.772 kb on + strand, within CA264_11190 at 2591.856 kb on - strand, within CA264_11190 at 2591.868 kb on - strand, within CA264_11190 at 2591.885 kb on + strand, within CA264_11190 at 2591.886 kb on - strand, within CA264_11190 at 2591.886 kb on - strand, within CA264_11190 at 2591.997 kb on + strand, within CA264_11190 at 2592.037 kb on + strand, within CA264_11190 at 2592.039 kb on + strand, within CA264_11190 at 2592.040 kb on - strand, within CA264_11190 at 2592.045 kb on + strand, within CA264_11190 at 2592.289 kb on + strand, within CA264_11190 at 2592.289 kb on + strand, within CA264_11190 at 2592.290 kb on - strand, within CA264_11190 at 2592.290 kb on - strand, within CA264_11190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,589,535 + -1.2 2,589,536 - +0.6 2,589,590 + -0.1 2,589,677 + -1.8 2,589,678 - +0.1 2,589,711 - -0.1 2,589,779 - -0.1 2,589,779 - +0.1 2,589,823 - -0.1 2,589,829 - -0.5 2,589,895 + -1.0 2,589,896 - +0.1 2,589,897 + +1.5 2,589,919 - +0.3 2,589,919 - -1.2 2,589,927 + -0.5 2,589,927 + -0.5 2,589,928 - +0.5 2,589,928 - -0.5 2,589,928 - -0.5 2,589,930 + +0.0 2,589,930 + +0.3 2,589,931 - +0.1 2,589,937 + -0.8 2,589,937 + -0.2 2,589,937 + -1.2 2,589,937 + +0.9 2,589,938 - -0.4 2,589,938 - -0.9 2,589,938 - -0.8 2,589,943 - -2.3 2,589,943 - +0.2 2,589,968 - -0.4 2,590,065 + CA264_11180 0.17 -0.1 2,590,115 + CA264_11180 0.26 -0.3 2,590,115 + CA264_11180 0.26 -0.2 2,590,116 - CA264_11180 0.27 -0.5 2,590,119 + CA264_11180 0.27 +0.2 2,590,120 - CA264_11180 0.27 -0.6 2,590,120 - CA264_11180 0.27 +0.3 2,590,236 - CA264_11180 0.48 -0.3 2,590,236 - CA264_11180 0.48 -0.2 2,590,313 + CA264_11180 0.62 -0.5 2,590,327 + CA264_11180 0.64 -0.2 2,590,328 - CA264_11180 0.65 +0.2 2,590,328 - CA264_11180 0.65 -0.9 2,590,370 + CA264_11180 0.72 +0.9 2,590,371 - CA264_11180 0.72 -0.7 2,590,402 + CA264_11180 0.78 -0.3 2,590,418 - CA264_11180 0.81 -0.6 2,590,609 + CA264_11185 0.12 -0.4 2,590,619 + CA264_11185 0.14 -0.3 2,590,620 - CA264_11185 0.14 -0.0 2,590,620 - CA264_11185 0.14 +0.4 2,590,620 - CA264_11185 0.14 -1.2 2,590,621 + CA264_11185 0.14 -0.3 2,590,621 + CA264_11185 0.14 -0.5 2,590,621 + CA264_11185 0.14 -0.2 2,590,621 + CA264_11185 0.14 -0.1 2,590,621 + CA264_11185 0.14 -1.7 2,590,622 - CA264_11185 0.14 -1.0 2,590,641 + CA264_11185 0.16 +0.9 2,590,641 + CA264_11185 0.16 -0.3 2,590,641 + CA264_11185 0.16 -0.3 2,590,641 + CA264_11185 0.16 +0.5 2,590,641 + CA264_11185 0.16 +0.3 2,590,642 - CA264_11185 0.16 +0.3 2,590,645 + CA264_11185 0.17 -0.9 2,590,812 - CA264_11185 0.37 -0.8 2,590,861 + CA264_11185 0.42 +2.0 2,590,862 - CA264_11185 0.43 +0.5 2,590,862 - CA264_11185 0.43 -0.3 2,590,865 - CA264_11185 0.43 +1.7 2,590,865 - CA264_11185 0.43 +0.2 2,590,882 + CA264_11185 0.45 +0.1 2,590,904 - CA264_11185 0.48 +0.3 2,590,904 - CA264_11185 0.48 +0.2 2,590,969 + CA264_11185 0.55 -0.3 2,590,969 + CA264_11185 0.55 -0.5 2,590,969 + CA264_11185 0.55 -0.8 2,590,970 - CA264_11185 0.55 -0.0 2,590,970 - CA264_11185 0.55 +0.0 2,590,979 - CA264_11185 0.57 -0.3 2,591,039 + CA264_11185 0.64 -1.9 2,591,059 + CA264_11185 0.66 +0.1 2,591,098 + CA264_11185 0.71 -0.3 2,591,098 + CA264_11185 0.71 -0.8 2,591,098 + CA264_11185 0.71 -0.5 2,591,099 - CA264_11185 0.71 +0.5 2,591,099 - CA264_11185 0.71 +0.5 2,591,167 + CA264_11185 0.79 +0.1 2,591,168 - CA264_11185 0.79 -0.9 2,591,204 + CA264_11185 0.83 +1.0 2,591,206 + CA264_11185 0.84 +0.5 2,591,206 + CA264_11185 0.84 -0.4 2,591,244 - CA264_11185 0.88 -1.4 2,591,244 - CA264_11185 0.88 +0.0 2,591,283 - -1.5 2,591,328 + -0.2 2,591,334 - -0.3 2,591,395 + -1.6 2,591,468 - -0.5 2,591,468 - -0.2 2,591,503 + -0.6 2,591,514 + -0.7 2,591,514 + +0.2 2,591,528 - +0.1 2,591,528 - +0.1 2,591,531 - -1.2 2,591,548 - +0.2 2,591,585 + +0.4 2,591,675 + -0.5 2,591,772 + CA264_11190 0.11 -0.9 2,591,856 - CA264_11190 0.18 -0.1 2,591,868 - CA264_11190 0.19 +0.3 2,591,885 + CA264_11190 0.20 +0.1 2,591,886 - CA264_11190 0.20 -0.9 2,591,886 - CA264_11190 0.20 -0.4 2,591,997 + CA264_11190 0.29 -1.3 2,592,037 + CA264_11190 0.32 +1.1 2,592,039 + CA264_11190 0.32 -0.3 2,592,040 - CA264_11190 0.32 +0.6 2,592,045 + CA264_11190 0.33 -0.5 2,592,289 + CA264_11190 0.52 -0.3 2,592,289 + CA264_11190 0.52 -0.4 2,592,290 - CA264_11190 0.52 -0.2 2,592,290 - CA264_11190 0.52 +0.3
Or see this region's nucleotide sequence