Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09895 and CA264_09900 are separated by 7 nucleotides CA264_09900 and CA264_09905 overlap by 4 nucleotides
CA264_09895: CA264_09895 - hypothetical protein, at 2,304,902 to 2,306,335
_09895
CA264_09900: CA264_09900 - hypothetical protein, at 2,306,343 to 2,309,585
_09900
CA264_09905: CA264_09905 - hypothetical protein, at 2,309,582 to 2,310,607
_09905
Position (kb)
2306
2307
2308
2309
2310 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2305.386 kb on + strand, within CA264_09895 at 2305.432 kb on + strand, within CA264_09895 at 2305.464 kb on + strand, within CA264_09895 at 2305.476 kb on + strand, within CA264_09895 at 2305.476 kb on + strand, within CA264_09895 at 2305.477 kb on - strand, within CA264_09895 at 2305.477 kb on - strand, within CA264_09895 at 2305.518 kb on + strand, within CA264_09895 at 2305.519 kb on - strand, within CA264_09895 at 2305.530 kb on + strand, within CA264_09895 at 2305.531 kb on - strand, within CA264_09895 at 2305.552 kb on + strand, within CA264_09895 at 2305.553 kb on - strand, within CA264_09895 at 2305.553 kb on - strand, within CA264_09895 at 2305.553 kb on - strand, within CA264_09895 at 2305.553 kb on - strand, within CA264_09895 at 2305.571 kb on + strand, within CA264_09895 at 2305.572 kb on - strand, within CA264_09895 at 2305.614 kb on + strand, within CA264_09895 at 2305.615 kb on - strand, within CA264_09895 at 2305.620 kb on + strand, within CA264_09895 at 2305.620 kb on + strand, within CA264_09895 at 2305.621 kb on - strand, within CA264_09895 at 2305.674 kb on - strand, within CA264_09895 at 2305.677 kb on - strand, within CA264_09895 at 2305.734 kb on + strand, within CA264_09895 at 2305.738 kb on + strand, within CA264_09895 at 2305.738 kb on + strand, within CA264_09895 at 2305.739 kb on - strand, within CA264_09895 at 2305.739 kb on - strand, within CA264_09895 at 2305.825 kb on + strand, within CA264_09895 at 2305.833 kb on + strand, within CA264_09895 at 2305.864 kb on - strand, within CA264_09895 at 2305.919 kb on + strand, within CA264_09895 at 2305.955 kb on - strand, within CA264_09895 at 2306.053 kb on + strand, within CA264_09895 at 2306.054 kb on - strand, within CA264_09895 at 2306.111 kb on + strand, within CA264_09895 at 2306.127 kb on - strand, within CA264_09895 at 2306.136 kb on + strand, within CA264_09895 at 2306.161 kb on - strand, within CA264_09895 at 2306.163 kb on + strand, within CA264_09895 at 2306.164 kb on - strand, within CA264_09895 at 2306.177 kb on - strand, within CA264_09895 at 2306.177 kb on - strand, within CA264_09895 at 2306.178 kb on + strand, within CA264_09895 at 2306.179 kb on - strand, within CA264_09895 at 2306.301 kb on - strand at 2306.335 kb on + strand at 2306.336 kb on - strand at 2306.336 kb on - strand at 2306.345 kb on - strand at 2306.358 kb on - strand at 2306.371 kb on - strand at 2306.473 kb on + strand at 2306.474 kb on - strand at 2306.474 kb on - strand at 2306.525 kb on + strand at 2306.526 kb on - strand at 2306.568 kb on - strand at 2306.574 kb on - strand at 2306.625 kb on - strand at 2306.630 kb on + strand at 2306.694 kb on - strand, within CA264_09900 at 2306.694 kb on - strand, within CA264_09900 at 2306.694 kb on - strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.695 kb on + strand, within CA264_09900 at 2306.696 kb on - strand, within CA264_09900 at 2306.696 kb on - strand, within CA264_09900 at 2306.696 kb on - strand, within CA264_09900 at 2306.696 kb on - strand, within CA264_09900 at 2306.696 kb on - strand, within CA264_09900 at 2306.699 kb on - strand, within CA264_09900 at 2306.699 kb on - strand, within CA264_09900 at 2306.700 kb on + strand, within CA264_09900 at 2306.700 kb on + strand, within CA264_09900 at 2306.867 kb on - strand, within CA264_09900 at 2306.897 kb on - strand, within CA264_09900 at 2306.897 kb on - strand, within CA264_09900 at 2306.947 kb on + strand, within CA264_09900 at 2306.979 kb on + strand, within CA264_09900 at 2307.000 kb on - strand, within CA264_09900 at 2307.091 kb on - strand, within CA264_09900 at 2307.091 kb on - strand, within CA264_09900 at 2307.105 kb on - strand, within CA264_09900 at 2307.135 kb on + strand, within CA264_09900 at 2307.207 kb on - strand, within CA264_09900 at 2307.207 kb on - strand, within CA264_09900 at 2307.207 kb on - strand, within CA264_09900 at 2307.232 kb on + strand, within CA264_09900 at 2307.233 kb on - strand, within CA264_09900 at 2307.275 kb on + strand, within CA264_09900 at 2307.275 kb on + strand, within CA264_09900 at 2307.278 kb on - strand, within CA264_09900 at 2307.278 kb on - strand, within CA264_09900 at 2307.278 kb on - strand, within CA264_09900 at 2307.349 kb on + strand, within CA264_09900 at 2307.349 kb on + strand, within CA264_09900 at 2307.350 kb on - strand, within CA264_09900 at 2307.365 kb on + strand, within CA264_09900 at 2307.366 kb on - strand, within CA264_09900 at 2307.366 kb on - strand, within CA264_09900 at 2307.429 kb on + strand, within CA264_09900 at 2307.430 kb on - strand, within CA264_09900 at 2307.519 kb on + strand, within CA264_09900 at 2307.520 kb on - strand, within CA264_09900 at 2307.520 kb on - strand, within CA264_09900 at 2307.520 kb on - strand, within CA264_09900 at 2307.520 kb on - strand, within CA264_09900 at 2307.520 kb on - strand, within CA264_09900 at 2307.572 kb on - strand, within CA264_09900 at 2307.575 kb on - strand, within CA264_09900 at 2307.590 kb on + strand, within CA264_09900 at 2307.590 kb on + strand, within CA264_09900 at 2307.592 kb on + strand, within CA264_09900 at 2307.707 kb on - strand, within CA264_09900 at 2307.796 kb on + strand, within CA264_09900 at 2307.796 kb on + strand, within CA264_09900 at 2307.796 kb on + strand, within CA264_09900 at 2307.811 kb on - strand, within CA264_09900 at 2307.874 kb on - strand, within CA264_09900 at 2307.907 kb on + strand, within CA264_09900 at 2307.953 kb on + strand, within CA264_09900 at 2308.137 kb on - strand, within CA264_09900 at 2308.137 kb on - strand, within CA264_09900 at 2308.138 kb on + strand, within CA264_09900 at 2308.139 kb on - strand, within CA264_09900 at 2308.141 kb on + strand, within CA264_09900 at 2308.141 kb on + strand, within CA264_09900 at 2308.141 kb on + strand, within CA264_09900 at 2308.145 kb on - strand, within CA264_09900 at 2308.172 kb on + strand, within CA264_09900 at 2308.173 kb on - strand, within CA264_09900 at 2308.177 kb on + strand, within CA264_09900 at 2308.178 kb on - strand, within CA264_09900 at 2308.178 kb on - strand, within CA264_09900 at 2308.221 kb on - strand, within CA264_09900 at 2308.292 kb on - strand, within CA264_09900 at 2308.294 kb on + strand, within CA264_09900 at 2308.351 kb on + strand, within CA264_09900 at 2308.406 kb on + strand, within CA264_09900 at 2308.407 kb on - strand, within CA264_09900 at 2308.514 kb on + strand, within CA264_09900 at 2308.590 kb on - strand, within CA264_09900 at 2308.624 kb on + strand, within CA264_09900 at 2308.626 kb on + strand, within CA264_09900 at 2308.626 kb on + strand, within CA264_09900 at 2308.654 kb on - strand, within CA264_09900 at 2308.747 kb on + strand, within CA264_09900 at 2308.748 kb on - strand, within CA264_09900 at 2309.026 kb on - strand at 2309.074 kb on - strand, within CA264_09900 at 2309.091 kb on - strand, within CA264_09900 at 2309.098 kb on + strand, within CA264_09900 at 2309.099 kb on - strand, within CA264_09900 at 2309.141 kb on + strand, within CA264_09900 at 2309.285 kb on + strand at 2309.286 kb on - strand at 2309.286 kb on - strand at 2309.315 kb on - strand at 2309.437 kb on + strand at 2309.437 kb on + strand at 2309.490 kb on + strand at 2309.490 kb on + strand at 2309.491 kb on - strand at 2309.491 kb on - strand at 2309.565 kb on + strand at 2309.565 kb on + strand at 2309.566 kb on - strand at 2309.566 kb on - strand at 2309.586 kb on - strand at 2309.586 kb on - strand at 2309.587 kb on + strand at 2309.587 kb on + strand at 2309.587 kb on + strand at 2309.588 kb on - strand at 2309.588 kb on - strand at 2309.594 kb on - strand at 2309.597 kb on - strand at 2309.611 kb on + strand at 2309.611 kb on + strand at 2309.615 kb on + strand at 2309.619 kb on + strand at 2309.619 kb on + strand at 2309.620 kb on - strand at 2309.620 kb on - strand at 2309.675 kb on + strand at 2309.675 kb on + strand at 2309.675 kb on + strand at 2309.723 kb on - strand, within CA264_09905 at 2309.742 kb on - strand, within CA264_09905 at 2309.760 kb on + strand, within CA264_09905 at 2309.810 kb on + strand, within CA264_09905 at 2309.890 kb on + strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.917 kb on + strand, within CA264_09905 at 2310.036 kb on - strand, within CA264_09905 at 2310.036 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.085 kb on + strand, within CA264_09905 at 2310.085 kb on + strand, within CA264_09905 at 2310.096 kb on - strand, within CA264_09905 at 2310.159 kb on + strand, within CA264_09905 at 2310.159 kb on + strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.172 kb on + strand, within CA264_09905 at 2310.188 kb on + strand, within CA264_09905 at 2310.234 kb on - strand, within CA264_09905 at 2310.317 kb on + strand, within CA264_09905 at 2310.318 kb on - strand, within CA264_09905 at 2310.318 kb on - strand, within CA264_09905 at 2310.330 kb on - strand, within CA264_09905
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,305,386 + CA264_09895 0.34 +0.4 2,305,432 + CA264_09895 0.37 -0.4 2,305,464 + CA264_09895 0.39 +0.6 2,305,476 + CA264_09895 0.40 +0.5 2,305,476 + CA264_09895 0.40 +0.3 2,305,477 - CA264_09895 0.40 -0.7 2,305,477 - CA264_09895 0.40 +0.0 2,305,518 + CA264_09895 0.43 -1.4 2,305,519 - CA264_09895 0.43 -0.5 2,305,530 + CA264_09895 0.44 -0.5 2,305,531 - CA264_09895 0.44 +0.1 2,305,552 + CA264_09895 0.45 +0.1 2,305,553 - CA264_09895 0.45 +0.5 2,305,553 - CA264_09895 0.45 +0.1 2,305,553 - CA264_09895 0.45 +0.2 2,305,553 - CA264_09895 0.45 -0.1 2,305,571 + CA264_09895 0.47 -0.7 2,305,572 - CA264_09895 0.47 -0.2 2,305,614 + CA264_09895 0.50 -1.0 2,305,615 - CA264_09895 0.50 +0.5 2,305,620 + CA264_09895 0.50 +0.8 2,305,620 + CA264_09895 0.50 -0.4 2,305,621 - CA264_09895 0.50 +0.5 2,305,674 - CA264_09895 0.54 +0.5 2,305,677 - CA264_09895 0.54 +1.5 2,305,734 + CA264_09895 0.58 +1.9 2,305,738 + CA264_09895 0.58 -0.7 2,305,738 + CA264_09895 0.58 -0.5 2,305,739 - CA264_09895 0.58 +0.2 2,305,739 - CA264_09895 0.58 +1.3 2,305,825 + CA264_09895 0.64 -1.8 2,305,833 + CA264_09895 0.65 -0.2 2,305,864 - CA264_09895 0.67 +0.2 2,305,919 + CA264_09895 0.71 +0.6 2,305,955 - CA264_09895 0.73 +1.0 2,306,053 + CA264_09895 0.80 -0.4 2,306,054 - CA264_09895 0.80 +0.7 2,306,111 + CA264_09895 0.84 +0.5 2,306,127 - CA264_09895 0.85 +1.2 2,306,136 + CA264_09895 0.86 -0.4 2,306,161 - CA264_09895 0.88 +0.2 2,306,163 + CA264_09895 0.88 -1.8 2,306,164 - CA264_09895 0.88 +0.5 2,306,177 - CA264_09895 0.89 +0.7 2,306,177 - CA264_09895 0.89 +0.4 2,306,178 + CA264_09895 0.89 +0.2 2,306,179 - CA264_09895 0.89 +1.3 2,306,301 - -0.3 2,306,335 + +0.9 2,306,336 - -0.5 2,306,336 - +1.3 2,306,345 - -0.3 2,306,358 - -0.3 2,306,371 - +0.0 2,306,473 + +1.9 2,306,474 - +0.6 2,306,474 - -0.9 2,306,525 + +1.4 2,306,526 - +0.9 2,306,568 - +0.5 2,306,574 - +0.2 2,306,625 - -0.7 2,306,630 + -0.4 2,306,694 - CA264_09900 0.11 +0.6 2,306,694 - CA264_09900 0.11 +0.2 2,306,694 - CA264_09900 0.11 -1.2 2,306,695 + CA264_09900 0.11 +1.0 2,306,695 + CA264_09900 0.11 -0.3 2,306,695 + CA264_09900 0.11 +0.2 2,306,695 + CA264_09900 0.11 +0.0 2,306,695 + CA264_09900 0.11 -0.3 2,306,695 + CA264_09900 0.11 -0.7 2,306,696 - CA264_09900 0.11 +0.6 2,306,696 - CA264_09900 0.11 +0.1 2,306,696 - CA264_09900 0.11 -0.3 2,306,696 - CA264_09900 0.11 -0.1 2,306,696 - CA264_09900 0.11 -0.1 2,306,699 - CA264_09900 0.11 +2.1 2,306,699 - CA264_09900 0.11 +0.2 2,306,700 + CA264_09900 0.11 +0.8 2,306,700 + CA264_09900 0.11 -0.1 2,306,867 - CA264_09900 0.16 +0.6 2,306,897 - CA264_09900 0.17 -0.3 2,306,897 - CA264_09900 0.17 -0.1 2,306,947 + CA264_09900 0.19 -0.1 2,306,979 + CA264_09900 0.20 -0.2 2,307,000 - CA264_09900 0.20 +0.3 2,307,091 - CA264_09900 0.23 -0.4 2,307,091 - CA264_09900 0.23 -0.5 2,307,105 - CA264_09900 0.23 +0.1 2,307,135 + CA264_09900 0.24 -0.2 2,307,207 - CA264_09900 0.27 -0.2 2,307,207 - CA264_09900 0.27 -0.6 2,307,207 - CA264_09900 0.27 +0.6 2,307,232 + CA264_09900 0.27 +0.1 2,307,233 - CA264_09900 0.27 +0.2 2,307,275 + CA264_09900 0.29 -1.9 2,307,275 + CA264_09900 0.29 +1.3 2,307,278 - CA264_09900 0.29 +0.3 2,307,278 - CA264_09900 0.29 -0.4 2,307,278 - CA264_09900 0.29 -0.2 2,307,349 + CA264_09900 0.31 -0.0 2,307,349 + CA264_09900 0.31 -0.7 2,307,350 - CA264_09900 0.31 +0.3 2,307,365 + CA264_09900 0.32 +0.7 2,307,366 - CA264_09900 0.32 +0.3 2,307,366 - CA264_09900 0.32 -1.5 2,307,429 + CA264_09900 0.33 +0.5 2,307,430 - CA264_09900 0.34 +1.5 2,307,519 + CA264_09900 0.36 -0.7 2,307,520 - CA264_09900 0.36 +0.8 2,307,520 - CA264_09900 0.36 +0.5 2,307,520 - CA264_09900 0.36 -0.1 2,307,520 - CA264_09900 0.36 +0.2 2,307,520 - CA264_09900 0.36 +0.4 2,307,572 - CA264_09900 0.38 -0.3 2,307,575 - CA264_09900 0.38 -0.7 2,307,590 + CA264_09900 0.38 +0.3 2,307,590 + CA264_09900 0.38 +1.2 2,307,592 + CA264_09900 0.39 -0.2 2,307,707 - CA264_09900 0.42 +1.4 2,307,796 + CA264_09900 0.45 +1.7 2,307,796 + CA264_09900 0.45 -0.2 2,307,796 + CA264_09900 0.45 -3.3 2,307,811 - CA264_09900 0.45 +0.2 2,307,874 - CA264_09900 0.47 -0.1 2,307,907 + CA264_09900 0.48 +1.0 2,307,953 + CA264_09900 0.50 -0.5 2,308,137 - CA264_09900 0.55 +0.0 2,308,137 - CA264_09900 0.55 +0.2 2,308,138 + CA264_09900 0.55 -0.3 2,308,139 - CA264_09900 0.55 +0.0 2,308,141 + CA264_09900 0.55 -0.6 2,308,141 + CA264_09900 0.55 +0.8 2,308,141 + CA264_09900 0.55 +1.4 2,308,145 - CA264_09900 0.56 -0.0 2,308,172 + CA264_09900 0.56 -0.7 2,308,173 - CA264_09900 0.56 +0.1 2,308,177 + CA264_09900 0.57 -0.3 2,308,178 - CA264_09900 0.57 +0.4 2,308,178 - CA264_09900 0.57 +1.1 2,308,221 - CA264_09900 0.58 +0.1 2,308,292 - CA264_09900 0.60 +1.4 2,308,294 + CA264_09900 0.60 +0.9 2,308,351 + CA264_09900 0.62 -0.5 2,308,406 + CA264_09900 0.64 +0.1 2,308,407 - CA264_09900 0.64 +0.1 2,308,514 + CA264_09900 0.67 -0.1 2,308,590 - CA264_09900 0.69 +0.0 2,308,624 + CA264_09900 0.70 -0.9 2,308,626 + CA264_09900 0.70 +0.5 2,308,626 + CA264_09900 0.70 -0.0 2,308,654 - CA264_09900 0.71 +0.3 2,308,747 + CA264_09900 0.74 +1.2 2,308,748 - CA264_09900 0.74 +0.3 2,309,026 - -0.3 2,309,074 - CA264_09900 0.84 +0.3 2,309,091 - CA264_09900 0.85 -1.0 2,309,098 + CA264_09900 0.85 -0.4 2,309,099 - CA264_09900 0.85 +0.9 2,309,141 + CA264_09900 0.86 -0.1 2,309,285 + -0.9 2,309,286 - -0.2 2,309,286 - -0.2 2,309,315 - -0.1 2,309,437 + -0.3 2,309,437 + -0.2 2,309,490 + -1.1 2,309,490 + -0.7 2,309,491 - +0.1 2,309,491 - -1.4 2,309,565 + -1.8 2,309,565 + +1.3 2,309,566 - -0.3 2,309,566 - +1.0 2,309,586 - -0.3 2,309,586 - -1.1 2,309,587 + +2.1 2,309,587 + -0.9 2,309,587 + +1.1 2,309,588 - -0.2 2,309,588 - +1.3 2,309,594 - -0.5 2,309,597 - -0.2 2,309,611 + +2.5 2,309,611 + +1.2 2,309,615 + -1.6 2,309,619 + +0.2 2,309,619 + -1.2 2,309,620 - -1.0 2,309,620 - -0.2 2,309,675 + -1.1 2,309,675 + -0.4 2,309,675 + -0.6 2,309,723 - CA264_09905 0.14 -1.5 2,309,742 - CA264_09905 0.16 -0.0 2,309,760 + CA264_09905 0.17 +0.1 2,309,810 + CA264_09905 0.22 -0.7 2,309,890 + CA264_09905 0.30 -0.3 2,309,891 - CA264_09905 0.30 -0.1 2,309,891 - CA264_09905 0.30 -0.4 2,309,891 - CA264_09905 0.30 +0.0 2,309,917 + CA264_09905 0.33 +0.1 2,310,036 - CA264_09905 0.44 +1.1 2,310,036 - CA264_09905 0.44 +0.1 2,310,039 - CA264_09905 0.45 -0.3 2,310,039 - CA264_09905 0.45 -0.2 2,310,039 - CA264_09905 0.45 -0.8 2,310,085 + CA264_09905 0.49 -2.2 2,310,085 + CA264_09905 0.49 -0.0 2,310,096 - CA264_09905 0.50 -0.3 2,310,159 + CA264_09905 0.56 -0.2 2,310,159 + CA264_09905 0.56 -0.2 2,310,160 - CA264_09905 0.56 -0.4 2,310,160 - CA264_09905 0.56 -0.1 2,310,160 - CA264_09905 0.56 -1.2 2,310,172 + CA264_09905 0.58 -0.1 2,310,188 + CA264_09905 0.59 +0.4 2,310,234 - CA264_09905 0.64 -0.1 2,310,317 + CA264_09905 0.72 +0.1 2,310,318 - CA264_09905 0.72 -1.2 2,310,318 - CA264_09905 0.72 -0.5 2,310,330 - CA264_09905 0.73 +0.2
Or see this region's nucleotide sequence