Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08790

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08785 and CA264_08790 are separated by 7 nucleotidesCA264_08790 and CA264_08795 overlap by 4 nucleotides CA264_08785: CA264_08785 - hypothetical protein, at 2,051,432 to 2,052,622 _08785 CA264_08790: CA264_08790 - LamB/YcsF family protein, at 2,052,630 to 2,053,391 _08790 CA264_08795: CA264_08795 - KipI antagonist, at 2,053,388 to 2,054,401 _08795 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -3 -2 -1 0 1at 2051.631 kb on - strand, within CA264_08785at 2051.631 kb on - strand, within CA264_08785at 2051.631 kb on - strand, within CA264_08785at 2051.632 kb on + strand, within CA264_08785at 2051.633 kb on - strand, within CA264_08785at 2051.633 kb on - strand, within CA264_08785at 2051.669 kb on - strand, within CA264_08785at 2051.687 kb on - strand, within CA264_08785at 2051.699 kb on - strand, within CA264_08785at 2051.821 kb on - strand, within CA264_08785at 2051.933 kb on - strand, within CA264_08785at 2052.129 kb on - strand, within CA264_08785at 2052.146 kb on - strand, within CA264_08785at 2052.273 kb on - strand, within CA264_08785at 2052.301 kb on + strand, within CA264_08785at 2052.332 kb on + strand, within CA264_08785at 2052.333 kb on - strand, within CA264_08785at 2052.333 kb on - strand, within CA264_08785at 2052.334 kb on + strand, within CA264_08785at 2052.337 kb on + strand, within CA264_08785at 2052.409 kb on + strand, within CA264_08785at 2052.450 kb on - strand, within CA264_08785at 2052.456 kb on - strand, within CA264_08785at 2052.481 kb on + strand, within CA264_08785at 2052.739 kb on - strand, within CA264_08790at 2052.823 kb on - strand, within CA264_08790at 2052.878 kb on + strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.958 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.978 kb on + strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2053.040 kb on - strand, within CA264_08790at 2053.118 kb on - strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.133 kb on - strand, within CA264_08790at 2053.273 kb on + strand, within CA264_08790at 2053.274 kb on - strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.401 kb on - strandat 2053.401 kb on - strandat 2053.453 kb on - strandat 2053.457 kb on + strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.595 kb on - strand, within CA264_08795at 2053.638 kb on + strand, within CA264_08795at 2053.639 kb on - strand, within CA264_08795at 2053.639 kb on - strand, within CA264_08795at 2053.685 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.691 kb on - strand, within CA264_08795at 2053.730 kb on + strand, within CA264_08795at 2053.731 kb on - strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.754 kb on - strand, within CA264_08795at 2053.755 kb on + strand, within CA264_08795at 2053.775 kb on - strand, within CA264_08795at 2053.775 kb on - strand, within CA264_08795at 2053.786 kb on - strand, within CA264_08795at 2053.828 kb on - strand, within CA264_08795at 2053.911 kb on - strand, within CA264_08795at 2054.008 kb on - strand, within CA264_08795at 2054.011 kb on + strand, within CA264_08795at 2054.012 kb on - strand, within CA264_08795at 2054.065 kb on - strand, within CA264_08795at 2054.070 kb on + strand, within CA264_08795at 2054.071 kb on - strand, within CA264_08795at 2054.071 kb on - strand, within CA264_08795at 2054.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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2,051,631 - CA264_08785 0.17 -0.0
2,051,631 - CA264_08785 0.17 +1.2
2,051,631 - CA264_08785 0.17 -0.1
2,051,632 + CA264_08785 0.17 -0.1
2,051,633 - CA264_08785 0.17 -0.4
2,051,633 - CA264_08785 0.17 +0.4
2,051,669 - CA264_08785 0.20 +0.9
2,051,687 - CA264_08785 0.21 +0.5
2,051,699 - CA264_08785 0.22 -1.0
2,051,821 - CA264_08785 0.33 +0.7
2,051,933 - CA264_08785 0.42 +0.3
2,052,129 - CA264_08785 0.59 -0.3
2,052,146 - CA264_08785 0.60 +0.2
2,052,273 - CA264_08785 0.71 -0.2
2,052,301 + CA264_08785 0.73 +0.2
2,052,332 + CA264_08785 0.76 +0.4
2,052,333 - CA264_08785 0.76 +1.7
2,052,333 - CA264_08785 0.76 +0.2
2,052,334 + CA264_08785 0.76 -0.3
2,052,337 + CA264_08785 0.76 +0.1
2,052,409 + CA264_08785 0.82 -0.9
2,052,450 - CA264_08785 0.85 -0.4
2,052,456 - CA264_08785 0.86 +0.1
2,052,481 + CA264_08785 0.88 +1.2
2,052,739 - CA264_08790 0.14 +1.5
2,052,823 - CA264_08790 0.25 -0.9
2,052,878 + CA264_08790 0.33 -2.5
2,052,879 - CA264_08790 0.33 -1.1
2,052,879 - CA264_08790 0.33 -0.9
2,052,879 - CA264_08790 0.33 -2.8
2,052,958 + CA264_08790 0.43 -0.9
2,052,963 + CA264_08790 0.44 -2.4
2,052,963 + CA264_08790 0.44 +1.1
2,052,965 + CA264_08790 0.44 -0.3
2,052,965 + CA264_08790 0.44 +1.1
2,052,965 + CA264_08790 0.44 -0.1
2,052,978 + CA264_08790 0.46 -2.5
2,052,979 - CA264_08790 0.46 +1.0
2,052,979 - CA264_08790 0.46 -1.2
2,053,040 - CA264_08790 0.54 +0.1
2,053,118 - CA264_08790 0.64 -1.0
2,053,132 + CA264_08790 0.66 -0.8
2,053,132 + CA264_08790 0.66 -1.2
2,053,133 - CA264_08790 0.66 -0.7
2,053,273 + CA264_08790 0.84 -1.7
2,053,274 - CA264_08790 0.85 -1.4
2,053,298 + CA264_08790 0.88 -2.4
2,053,298 + CA264_08790 0.88 -0.3
2,053,401 - -0.3
2,053,401 - -0.4
2,053,453 - +0.6
2,053,457 + -0.3
2,053,458 - +0.4
2,053,458 - -0.0
2,053,458 - -0.1
2,053,595 - CA264_08795 0.20 +0.0
2,053,638 + CA264_08795 0.25 +0.9
2,053,639 - CA264_08795 0.25 -0.2
2,053,639 - CA264_08795 0.25 -0.2
2,053,685 + CA264_08795 0.29 -1.8
2,053,687 + CA264_08795 0.29 -1.7
2,053,687 + CA264_08795 0.29 -0.3
2,053,687 + CA264_08795 0.29 -0.5
2,053,687 + CA264_08795 0.29 +0.5
2,053,687 + CA264_08795 0.29 +0.7
2,053,688 - CA264_08795 0.30 +0.4
2,053,688 - CA264_08795 0.30 +0.6
2,053,688 - CA264_08795 0.30 +0.1
2,053,691 - CA264_08795 0.30 +0.1
2,053,730 + CA264_08795 0.34 -0.7
2,053,731 - CA264_08795 0.34 -1.1
2,053,753 + CA264_08795 0.36 -1.3
2,053,753 + CA264_08795 0.36 +1.7
2,053,753 + CA264_08795 0.36 +0.0
2,053,754 - CA264_08795 0.36 +0.4
2,053,755 + CA264_08795 0.36 -0.6
2,053,775 - CA264_08795 0.38 +0.3
2,053,775 - CA264_08795 0.38 -0.3
2,053,786 - CA264_08795 0.39 +0.1
2,053,828 - CA264_08795 0.43 -0.3
2,053,911 - CA264_08795 0.52 -0.6
2,054,008 - CA264_08795 0.61 +0.1
2,054,011 + CA264_08795 0.61 -0.8
2,054,012 - CA264_08795 0.62 +0.2
2,054,065 - CA264_08795 0.67 -0.6
2,054,070 + CA264_08795 0.67 -0.6
2,054,071 - CA264_08795 0.67 +0.1
2,054,071 - CA264_08795 0.67 +0.7
2,054,385 - +0.3

Or see this region's nucleotide sequence