Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08670 and CA264_08675 are separated by 276 nucleotides CA264_08675 and CA264_08680 are separated by 76 nucleotides
CA264_08670: CA264_08670 - hypothetical protein, at 2,011,764 to 2,013,023
_08670
CA264_08675: CA264_08675 - hypothetical protein, at 2,013,300 to 2,014,349
_08675
CA264_08680: CA264_08680 - glycoside hydrolase, at 2,014,426 to 2,015,604
_08680
Position (kb)
2013
2014
2015 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2012.453 kb on - strand, within CA264_08670 at 2012.608 kb on - strand, within CA264_08670 at 2012.626 kb on + strand, within CA264_08670 at 2012.812 kb on + strand, within CA264_08670 at 2012.812 kb on + strand, within CA264_08670 at 2012.896 kb on - strand, within CA264_08670 at 2012.997 kb on - strand at 2012.997 kb on - strand at 2013.137 kb on - strand at 2013.278 kb on + strand at 2013.403 kb on - strand at 2013.542 kb on - strand, within CA264_08675 at 2013.561 kb on + strand, within CA264_08675 at 2013.561 kb on + strand, within CA264_08675 at 2013.562 kb on - strand, within CA264_08675 at 2013.562 kb on - strand, within CA264_08675 at 2013.649 kb on + strand, within CA264_08675 at 2013.650 kb on - strand, within CA264_08675 at 2013.664 kb on + strand, within CA264_08675 at 2013.667 kb on + strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.763 kb on - strand, within CA264_08675 at 2013.781 kb on + strand, within CA264_08675 at 2013.848 kb on + strand, within CA264_08675 at 2013.848 kb on + strand, within CA264_08675 at 2013.906 kb on + strand, within CA264_08675 at 2014.017 kb on - strand, within CA264_08675 at 2014.105 kb on - strand, within CA264_08675 at 2014.105 kb on - strand, within CA264_08675 at 2014.170 kb on - strand, within CA264_08675 at 2014.217 kb on - strand, within CA264_08675 at 2014.271 kb on - strand at 2014.300 kb on + strand at 2014.301 kb on - strand at 2014.408 kb on + strand at 2014.410 kb on + strand at 2014.433 kb on + strand at 2014.434 kb on - strand at 2014.434 kb on - strand at 2014.543 kb on - strand at 2014.543 kb on - strand at 2014.761 kb on + strand, within CA264_08680 at 2014.762 kb on - strand, within CA264_08680 at 2014.796 kb on - strand, within CA264_08680 at 2015.007 kb on - strand, within CA264_08680 at 2015.007 kb on - strand, within CA264_08680 at 2015.063 kb on + strand, within CA264_08680 at 2015.160 kb on - strand, within CA264_08680 at 2015.204 kb on + strand, within CA264_08680 at 2015.336 kb on - strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,012,453 - CA264_08670 0.55 -0.9 2,012,608 - CA264_08670 0.67 -0.1 2,012,626 + CA264_08670 0.68 -1.4 2,012,812 + CA264_08670 0.83 +0.5 2,012,812 + CA264_08670 0.83 -1.1 2,012,896 - CA264_08670 0.90 -0.4 2,012,997 - -0.0 2,012,997 - -0.6 2,013,137 - -2.5 2,013,278 + -0.6 2,013,403 - -0.7 2,013,542 - CA264_08675 0.23 -2.8 2,013,561 + CA264_08675 0.25 +0.6 2,013,561 + CA264_08675 0.25 -1.1 2,013,562 - CA264_08675 0.25 -0.9 2,013,562 - CA264_08675 0.25 +0.7 2,013,649 + CA264_08675 0.33 -0.2 2,013,650 - CA264_08675 0.33 +0.3 2,013,664 + CA264_08675 0.35 -0.7 2,013,667 + CA264_08675 0.35 -0.1 2,013,668 - CA264_08675 0.35 -1.3 2,013,668 - CA264_08675 0.35 -1.4 2,013,668 - CA264_08675 0.35 -1.8 2,013,688 + CA264_08675 0.37 -2.9 2,013,688 + CA264_08675 0.37 -1.0 2,013,688 + CA264_08675 0.37 +0.1 2,013,689 - CA264_08675 0.37 -1.2 2,013,689 - CA264_08675 0.37 -2.1 2,013,689 - CA264_08675 0.37 -1.2 2,013,762 + CA264_08675 0.44 -0.6 2,013,762 + CA264_08675 0.44 -0.8 2,013,762 + CA264_08675 0.44 +0.4 2,013,763 - CA264_08675 0.44 +0.5 2,013,781 + CA264_08675 0.46 -0.3 2,013,848 + CA264_08675 0.52 -0.2 2,013,848 + CA264_08675 0.52 +0.9 2,013,906 + CA264_08675 0.58 -1.2 2,014,017 - CA264_08675 0.68 -1.0 2,014,105 - CA264_08675 0.77 -0.4 2,014,105 - CA264_08675 0.77 -0.3 2,014,170 - CA264_08675 0.83 +0.4 2,014,217 - CA264_08675 0.87 -1.1 2,014,271 - +0.6 2,014,300 + -0.9 2,014,301 - -1.0 2,014,408 + -0.8 2,014,410 + +0.2 2,014,433 + -0.7 2,014,434 - -1.1 2,014,434 - +0.0 2,014,543 - +0.8 2,014,543 - -0.6 2,014,761 + CA264_08680 0.28 +0.1 2,014,762 - CA264_08680 0.28 -0.9 2,014,796 - CA264_08680 0.31 -1.5 2,015,007 - CA264_08680 0.49 -0.1 2,015,007 - CA264_08680 0.49 -0.5 2,015,063 + CA264_08680 0.54 -1.8 2,015,160 - CA264_08680 0.62 -2.1 2,015,204 + CA264_08680 0.66 -0.7 2,015,336 - CA264_08680 0.77 +0.5 2,015,341 + CA264_08680 0.78 +1.8 2,015,341 + CA264_08680 0.78 -0.5 2,015,341 + CA264_08680 0.78 -0.7
Or see this region's nucleotide sequence