Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03865

Experiment: m.b. Carbenicillin 0.0015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03855 and CA264_03860 are separated by 6 nucleotidesCA264_03860 and CA264_03865 are separated by 6 nucleotidesCA264_03865 and CA264_03870 are separated by 401 nucleotidesCA264_03870 and CA264_03875 are separated by 3 nucleotides CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715 _03855 CA264_03860: CA264_03860 - hypothetical protein, at 900,722 to 901,252 _03860 CA264_03865: CA264_03865 - phosphoglycerate dehydrogenase, at 901,259 to 902,215 _03865 CA264_03870: CA264_03870 - transcription elongation factor GreA, at 902,617 to 903,090 _03870 CA264_03875: CA264_03875 - HIT family protein, at 903,094 to 903,495 _03875 Position (kb) 901 902 903Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 900.351 kb on + strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.497 kb on + strand, within CA264_03855at 900.498 kb on - strand, within CA264_03855at 900.617 kb on - strandat 900.643 kb on + strandat 900.644 kb on - strandat 900.646 kb on + strandat 900.680 kb on + strandat 900.751 kb on + strandat 900.751 kb on + strandat 900.754 kb on + strandat 900.755 kb on - strandat 900.798 kb on + strand, within CA264_03860at 900.819 kb on + strand, within CA264_03860at 900.820 kb on - strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.828 kb on + strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.846 kb on - strand, within CA264_03860at 900.884 kb on + strand, within CA264_03860at 900.885 kb on - strand, within CA264_03860at 900.899 kb on + strand, within CA264_03860at 900.900 kb on - strand, within CA264_03860at 900.903 kb on + strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.908 kb on - strand, within CA264_03860at 900.944 kb on + strand, within CA264_03860at 900.945 kb on - strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.027 kb on + strand, within CA264_03860at 901.028 kb on - strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.130 kb on + strand, within CA264_03860at 901.131 kb on - strand, within CA264_03860at 901.218 kb on + strandat 901.219 kb on - strandat 901.223 kb on + strandat 901.223 kb on + strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.246 kb on - strandat 902.193 kb on + strandat 902.213 kb on + strandat 902.213 kb on + strandat 902.213 kb on + strandat 902.214 kb on - strandat 902.297 kb on - strandat 902.387 kb on - strandat 902.471 kb on + strandat 902.471 kb on + strandat 902.472 kb on - strandat 902.472 kb on - strandat 902.472 kb on - strandat 902.472 kb on - strandat 902.477 kb on - strandat 902.478 kb on + strandat 902.479 kb on - strandat 902.494 kb on + strandat 902.494 kb on + strandat 902.494 kb on + strandat 902.495 kb on - strandat 902.495 kb on - strandat 902.499 kb on - strandat 902.499 kb on - strandat 902.501 kb on - strandat 902.540 kb on + strandat 902.616 kb on + strandat 902.617 kb on - strandat 902.632 kb on + strandat 902.635 kb on + strandat 902.635 kb on + strandat 902.636 kb on - strandat 902.762 kb on - strand, within CA264_03870at 902.930 kb on - strand, within CA264_03870at 902.930 kb on - strand, within CA264_03870at 902.931 kb on + strand, within CA264_03870at 903.094 kb on - strandat 903.122 kb on + strandat 903.150 kb on - strand, within CA264_03875at 903.150 kb on - strand, within CA264_03875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
remove
900,351 + CA264_03855 0.73 +0.3
900,352 - CA264_03855 0.73 +0.2
900,352 - CA264_03855 0.73 +0.2
900,497 + CA264_03855 0.84 +0.4
900,498 - CA264_03855 0.84 +0.3
900,617 - +0.2
900,643 + +1.0
900,644 - +0.2
900,646 + +1.1
900,680 + +0.7
900,751 + +0.7
900,751 + +0.2
900,754 + +0.2
900,755 - +0.6
900,798 + CA264_03860 0.14 +0.2
900,819 + CA264_03860 0.18 -0.6
900,820 - CA264_03860 0.18 -1.0
900,825 + CA264_03860 0.19 +0.7
900,825 + CA264_03860 0.19 +0.3
900,825 + CA264_03860 0.19 +0.0
900,826 - CA264_03860 0.20 -0.0
900,826 - CA264_03860 0.20 -0.1
900,826 - CA264_03860 0.20 -0.2
900,826 - CA264_03860 0.20 -0.6
900,828 + CA264_03860 0.20 +0.2
900,829 - CA264_03860 0.20 -0.2
900,829 - CA264_03860 0.20 -0.0
900,846 - CA264_03860 0.23 +0.5
900,884 + CA264_03860 0.31 +0.8
900,885 - CA264_03860 0.31 +0.8
900,899 + CA264_03860 0.33 +1.4
900,900 - CA264_03860 0.34 +0.6
900,903 + CA264_03860 0.34 +0.2
900,904 - CA264_03860 0.34 +0.7
900,904 - CA264_03860 0.34 -1.6
900,904 - CA264_03860 0.34 +0.7
900,904 - CA264_03860 0.34 +0.3
900,907 + CA264_03860 0.35 -0.4
900,907 + CA264_03860 0.35 +0.2
900,907 + CA264_03860 0.35 +0.1
900,907 + CA264_03860 0.35 +1.2
900,908 - CA264_03860 0.35 +0.1
900,944 + CA264_03860 0.42 +0.9
900,945 - CA264_03860 0.42 -0.2
901,005 + CA264_03860 0.53 +0.1
901,005 + CA264_03860 0.53 -0.2
901,027 + CA264_03860 0.57 +1.0
901,028 - CA264_03860 0.58 +0.3
901,061 + CA264_03860 0.64 +0.1
901,061 + CA264_03860 0.64 +0.2
901,061 + CA264_03860 0.64 +0.5
901,130 + CA264_03860 0.77 +0.2
901,131 - CA264_03860 0.77 +1.1
901,218 + +0.6
901,219 - -0.3
901,223 + -0.1
901,223 + +1.5
901,224 - +1.9
901,224 - +0.7
901,224 - -1.2
901,225 + +0.4
901,225 + -0.4
901,225 + +0.6
901,246 - +0.8
902,193 + +0.1
902,213 + +0.9
902,213 + +0.6
902,213 + -1.4
902,214 - +0.7
902,297 - +0.6
902,387 - +0.3
902,471 + +0.4
902,471 + -0.3
902,472 - -0.2
902,472 - +0.5
902,472 - -0.1
902,472 - +0.0
902,477 - +2.5
902,478 + +1.3
902,479 - +1.1
902,494 + +0.6
902,494 + +0.2
902,494 + +0.1
902,495 - -1.0
902,495 - -0.2
902,499 - +0.3
902,499 - +0.1
902,501 - +1.2
902,540 + +0.1
902,616 + -0.9
902,617 - -0.8
902,632 + -3.5
902,635 + -2.5
902,635 + -2.0
902,636 - -0.8
902,762 - CA264_03870 0.31 -5.4
902,930 - CA264_03870 0.66 -3.6
902,930 - CA264_03870 0.66 -1.9
902,931 + CA264_03870 0.66 -3.2
903,094 - -0.5
903,122 + -0.3
903,150 - CA264_03875 0.14 -0.2
903,150 - CA264_03875 0.14 +0.0

Or see this region's nucleotide sequence