Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03805 and CA264_03810 are separated by 99 nucleotides CA264_03810 and CA264_03815 are separated by 6 nucleotides
CA264_03805: CA264_03805 - serine protease, at 889,515 to 890,885
_03805
CA264_03810: CA264_03810 - hypothetical protein, at 890,985 to 891,761
_03810
CA264_03815: CA264_03815 - peptidoglycan-binding protein, at 891,768 to 892,748
_03815
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 890.056 kb on + strand, within CA264_03805 at 890.056 kb on + strand, within CA264_03805 at 890.057 kb on - strand, within CA264_03805 at 890.059 kb on + strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.071 kb on + strand, within CA264_03805 at 890.072 kb on - strand, within CA264_03805 at 890.113 kb on - strand, within CA264_03805 at 890.137 kb on + strand, within CA264_03805 at 890.153 kb on + strand, within CA264_03805 at 890.337 kb on - strand, within CA264_03805 at 890.368 kb on - strand, within CA264_03805 at 890.368 kb on - strand, within CA264_03805 at 890.435 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.450 kb on - strand, within CA264_03805 at 890.458 kb on + strand, within CA264_03805 at 890.459 kb on - strand, within CA264_03805 at 890.530 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.597 kb on - strand, within CA264_03805 at 890.597 kb on - strand, within CA264_03805 at 890.846 kb on - strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.849 kb on - strand at 890.902 kb on - strand at 890.923 kb on - strand at 890.925 kb on + strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.951 kb on - strand at 890.951 kb on - strand at 890.951 kb on - strand at 890.963 kb on + strand at 890.963 kb on + strand at 891.067 kb on - strand, within CA264_03810 at 891.451 kb on - strand, within CA264_03810 at 891.529 kb on + strand, within CA264_03810 at 891.529 kb on + strand, within CA264_03810 at 891.530 kb on - strand, within CA264_03810 at 891.595 kb on + strand, within CA264_03810 at 891.595 kb on + strand, within CA264_03810 at 891.596 kb on - strand, within CA264_03810 at 891.608 kb on - strand, within CA264_03810 at 891.710 kb on - strand at 891.773 kb on - strand at 891.773 kb on - strand at 891.773 kb on - strand at 891.859 kb on + strand at 891.900 kb on - strand, within CA264_03815 at 891.985 kb on + strand, within CA264_03815 at 892.122 kb on - strand, within CA264_03815 at 892.291 kb on - strand, within CA264_03815 at 892.446 kb on + strand, within CA264_03815 at 892.539 kb on + strand, within CA264_03815 at 892.539 kb on + strand, within CA264_03815 at 892.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 890,056 + CA264_03805 0.39 +0.2 890,056 + CA264_03805 0.39 -1.8 890,057 - CA264_03805 0.40 -0.1 890,059 + CA264_03805 0.40 -1.8 890,060 - CA264_03805 0.40 -0.2 890,060 - CA264_03805 0.40 -0.1 890,060 - CA264_03805 0.40 +0.8 890,060 - CA264_03805 0.40 -0.2 890,071 + CA264_03805 0.41 -1.9 890,072 - CA264_03805 0.41 -0.1 890,113 - CA264_03805 0.44 -2.0 890,137 + CA264_03805 0.45 -2.5 890,153 + CA264_03805 0.47 -2.5 890,337 - CA264_03805 0.60 -0.1 890,368 - CA264_03805 0.62 -2.8 890,368 - CA264_03805 0.62 -0.3 890,435 + CA264_03805 0.67 -0.1 890,449 + CA264_03805 0.68 -2.0 890,449 + CA264_03805 0.68 -2.1 890,449 + CA264_03805 0.68 -2.6 890,450 - CA264_03805 0.68 -0.5 890,458 + CA264_03805 0.69 -3.6 890,459 - CA264_03805 0.69 +0.0 890,530 + CA264_03805 0.74 -3.2 890,596 + CA264_03805 0.79 -3.3 890,596 + CA264_03805 0.79 -1.2 890,596 + CA264_03805 0.79 -2.4 890,597 - CA264_03805 0.79 -1.2 890,597 - CA264_03805 0.79 +4.8 890,846 - -1.5 890,848 + -2.7 890,848 + -2.6 890,848 + -4.1 890,848 + -3.6 890,849 - -1.0 890,902 - -2.4 890,923 - -2.8 890,925 + -1.4 890,946 - -0.5 890,946 - -1.3 890,946 - -1.4 890,946 - -2.0 890,951 - -0.4 890,951 - -2.9 890,951 - -2.7 890,963 + +0.5 890,963 + -0.8 891,067 - CA264_03810 0.11 -1.2 891,451 - CA264_03810 0.60 -0.3 891,529 + CA264_03810 0.70 +0.9 891,529 + CA264_03810 0.70 -0.7 891,530 - CA264_03810 0.70 -0.1 891,595 + CA264_03810 0.79 +0.9 891,595 + CA264_03810 0.79 -1.4 891,596 - CA264_03810 0.79 -0.7 891,608 - CA264_03810 0.80 +1.9 891,710 - -1.0 891,773 - -2.6 891,773 - -1.7 891,773 - -0.2 891,859 + -3.0 891,900 - CA264_03815 0.13 -1.9 891,985 + CA264_03815 0.22 -3.1 892,122 - CA264_03815 0.36 -0.8 892,291 - CA264_03815 0.53 -3.8 892,446 + CA264_03815 0.69 -2.9 892,539 + CA264_03815 0.79 -2.1 892,539 + CA264_03815 0.79 -2.1 892,737 + -3.7
Or see this region's nucleotide sequence