Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03690

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03685 and CA264_03690 are separated by 8 nucleotidesCA264_03690 and CA264_03695 are separated by 125 nucleotides CA264_03685: CA264_03685 - CusA/CzcA family heavy metal efflux RND transporter, at 859,918 to 864,294 _03685 CA264_03690: CA264_03690 - efflux transporter periplasmic adaptor subunit, at 864,303 to 865,547 _03690 CA264_03695: CA264_03695 - heavy metal translocating P-type ATPase, at 865,673 to 867,700 _03695 Position (kb) 864 865 866Strain fitness (log2 ratio) -1 0 1 2at 863.338 kb on + strand, within CA264_03685at 863.382 kb on + strand, within CA264_03685at 863.385 kb on - strand, within CA264_03685at 863.385 kb on - strand, within CA264_03685at 863.389 kb on + strand, within CA264_03685at 863.389 kb on + strand, within CA264_03685at 863.390 kb on - strand, within CA264_03685at 863.427 kb on - strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.438 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.498 kb on - strand, within CA264_03685at 863.498 kb on - strand, within CA264_03685at 863.602 kb on + strand, within CA264_03685at 863.724 kb on + strand, within CA264_03685at 863.735 kb on + strand, within CA264_03685at 863.735 kb on + strand, within CA264_03685at 863.756 kb on + strand, within CA264_03685at 863.798 kb on - strand, within CA264_03685at 863.800 kb on - strand, within CA264_03685at 863.878 kb on + strandat 863.879 kb on - strandat 864.036 kb on - strandat 864.142 kb on + strandat 864.194 kb on - strandat 864.215 kb on - strandat 864.215 kb on - strandat 864.264 kb on + strandat 864.264 kb on + strandat 864.264 kb on + strandat 864.269 kb on - strandat 864.269 kb on - strandat 864.276 kb on - strandat 864.292 kb on + strandat 864.293 kb on - strandat 864.293 kb on - strandat 864.335 kb on + strandat 864.337 kb on + strandat 864.337 kb on + strandat 864.338 kb on - strandat 864.343 kb on + strandat 864.451 kb on + strand, within CA264_03690at 864.451 kb on + strand, within CA264_03690at 864.451 kb on + strand, within CA264_03690at 864.495 kb on + strand, within CA264_03690at 864.509 kb on + strand, within CA264_03690at 864.510 kb on - strand, within CA264_03690at 864.510 kb on - strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.633 kb on + strand, within CA264_03690at 864.634 kb on - strand, within CA264_03690at 864.682 kb on + strand, within CA264_03690at 864.682 kb on + strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.687 kb on + strand, within CA264_03690at 864.688 kb on - strand, within CA264_03690at 864.727 kb on - strand, within CA264_03690at 864.941 kb on + strand, within CA264_03690at 864.942 kb on - strand, within CA264_03690at 864.997 kb on - strand, within CA264_03690at 865.116 kb on + strand, within CA264_03690at 865.129 kb on + strand, within CA264_03690at 865.130 kb on - strand, within CA264_03690at 865.212 kb on - strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.242 kb on + strand, within CA264_03690at 865.243 kb on - strand, within CA264_03690at 865.308 kb on + strand, within CA264_03690at 865.409 kb on - strand, within CA264_03690at 865.409 kb on - strand, within CA264_03690at 865.497 kb on + strandat 865.497 kb on + strandat 865.497 kb on + strandat 865.498 kb on - strandat 865.500 kb on + strandat 865.501 kb on - strandat 865.553 kb on + strandat 865.622 kb on + strandat 865.622 kb on + strandat 865.672 kb on + strandat 865.703 kb on - strandat 865.704 kb on + strandat 865.859 kb on + strandat 865.940 kb on + strand, within CA264_03695at 865.959 kb on - strand, within CA264_03695at 866.075 kb on + strand, within CA264_03695at 866.117 kb on + strand, within CA264_03695at 866.117 kb on + strand, within CA264_03695at 866.118 kb on - strand, within CA264_03695at 866.206 kb on - strand, within CA264_03695at 866.363 kb on - strand, within CA264_03695at 866.363 kb on - strand, within CA264_03695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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863,338 + CA264_03685 0.78 +1.2
863,382 + CA264_03685 0.79 -1.1
863,385 - CA264_03685 0.79 +0.0
863,385 - CA264_03685 0.79 -0.5
863,389 + CA264_03685 0.79 +0.3
863,389 + CA264_03685 0.79 -0.7
863,390 - CA264_03685 0.79 -0.2
863,427 - CA264_03685 0.80 -0.3
863,437 + CA264_03685 0.80 -1.6
863,437 + CA264_03685 0.80 +1.6
863,437 + CA264_03685 0.80 -0.6
863,437 + CA264_03685 0.80 -0.6
863,438 - CA264_03685 0.80 -0.6
863,494 - CA264_03685 0.82 -0.0
863,494 - CA264_03685 0.82 -0.5
863,494 - CA264_03685 0.82 -0.7
863,498 - CA264_03685 0.82 -0.7
863,498 - CA264_03685 0.82 -0.3
863,602 + CA264_03685 0.84 +0.9
863,724 + CA264_03685 0.87 -0.6
863,735 + CA264_03685 0.87 -0.5
863,735 + CA264_03685 0.87 -0.5
863,756 + CA264_03685 0.88 +1.0
863,798 - CA264_03685 0.89 -0.5
863,800 - CA264_03685 0.89 -0.6
863,878 + -0.6
863,879 - +1.5
864,036 - -0.7
864,142 + -1.1
864,194 - -0.5
864,215 - -0.8
864,215 - -0.8
864,264 + -1.4
864,264 + -0.3
864,264 + -0.7
864,269 - +0.1
864,269 - -0.1
864,276 - +0.3
864,292 + -0.5
864,293 - +0.1
864,293 - +1.0
864,335 + +0.3
864,337 + -0.7
864,337 + +1.3
864,338 - -0.0
864,343 + -0.3
864,451 + CA264_03690 0.12 -0.7
864,451 + CA264_03690 0.12 +1.1
864,451 + CA264_03690 0.12 -0.6
864,495 + CA264_03690 0.15 -0.5
864,509 + CA264_03690 0.17 -0.7
864,510 - CA264_03690 0.17 -0.7
864,510 - CA264_03690 0.17 -1.1
864,512 + CA264_03690 0.17 +0.4
864,512 + CA264_03690 0.17 -0.6
864,512 + CA264_03690 0.17 -0.4
864,633 + CA264_03690 0.27 +0.1
864,634 - CA264_03690 0.27 +2.5
864,682 + CA264_03690 0.30 +0.5
864,682 + CA264_03690 0.30 -0.4
864,683 - CA264_03690 0.31 +0.1
864,683 - CA264_03690 0.31 -0.3
864,687 + CA264_03690 0.31 -0.8
864,688 - CA264_03690 0.31 +0.3
864,727 - CA264_03690 0.34 -0.5
864,941 + CA264_03690 0.51 +0.1
864,942 - CA264_03690 0.51 +0.1
864,997 - CA264_03690 0.56 -0.5
865,116 + CA264_03690 0.65 -0.5
865,129 + CA264_03690 0.66 +0.2
865,130 - CA264_03690 0.66 -0.3
865,212 - CA264_03690 0.73 -0.4
865,224 + CA264_03690 0.74 +1.3
865,224 + CA264_03690 0.74 +1.0
865,224 + CA264_03690 0.74 +0.1
865,224 + CA264_03690 0.74 +0.0
865,242 + CA264_03690 0.75 -0.1
865,243 - CA264_03690 0.76 -0.0
865,308 + CA264_03690 0.81 +0.7
865,409 - CA264_03690 0.89 +0.5
865,409 - CA264_03690 0.89 -0.2
865,497 + -0.5
865,497 + -1.0
865,497 + +0.8
865,498 - +0.4
865,500 + +0.2
865,501 - -0.0
865,553 + -0.2
865,622 + +0.1
865,622 + -0.4
865,672 + +0.0
865,703 - +1.6
865,704 + +0.4
865,859 + -0.3
865,940 + CA264_03695 0.13 -1.0
865,959 - CA264_03695 0.14 +0.3
866,075 + CA264_03695 0.20 -0.1
866,117 + CA264_03695 0.22 +0.5
866,117 + CA264_03695 0.22 -0.3
866,118 - CA264_03695 0.22 -0.8
866,206 - CA264_03695 0.26 +0.6
866,363 - CA264_03695 0.34 -1.0
866,363 - CA264_03695 0.34 +1.4

Or see this region's nucleotide sequence