Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03410

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03400 and CA264_03405 overlap by 4 nucleotidesCA264_03405 and CA264_03410 are separated by 81 nucleotidesCA264_03410 and CA264_03415 overlap by 13 nucleotides CA264_03400: CA264_03400 - hypothetical protein, at 793,353 to 793,886 _03400 CA264_03405: CA264_03405 - hypothetical protein, at 793,883 to 794,497 _03405 CA264_03410: CA264_03410 - glutamine amidotransferase, at 794,579 to 795,499 _03410 CA264_03415: CA264_03415 - amidoligase, at 795,487 to 796,491 _03415 Position (kb) 794 795 796Strain fitness (log2 ratio) -2 -1 0 1 2at 793.668 kb on - strand, within CA264_03400at 793.844 kb on - strandat 793.892 kb on - strandat 793.903 kb on + strandat 793.904 kb on - strandat 793.906 kb on - strandat 793.929 kb on - strandat 793.968 kb on + strand, within CA264_03405at 794.214 kb on + strand, within CA264_03405at 794.215 kb on - strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.238 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.255 kb on + strand, within CA264_03405at 794.256 kb on - strand, within CA264_03405at 794.257 kb on + strand, within CA264_03405at 794.482 kb on + strandat 794.483 kb on - strandat 794.483 kb on - strandat 794.484 kb on + strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.604 kb on - strandat 794.663 kb on + strandat 794.663 kb on + strandat 794.676 kb on - strand, within CA264_03410at 794.720 kb on + strand, within CA264_03410at 794.721 kb on - strand, within CA264_03410at 794.769 kb on + strand, within CA264_03410at 794.929 kb on + strand, within CA264_03410at 794.929 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.954 kb on - strand, within CA264_03410at 794.954 kb on - strand, within CA264_03410at 794.979 kb on + strand, within CA264_03410at 795.001 kb on - strand, within CA264_03410at 795.019 kb on - strand, within CA264_03410at 795.020 kb on + strand, within CA264_03410at 795.236 kb on + strand, within CA264_03410at 795.236 kb on + strand, within CA264_03410at 795.237 kb on - strand, within CA264_03410at 795.283 kb on + strand, within CA264_03410at 795.283 kb on + strand, within CA264_03410at 795.294 kb on - strand, within CA264_03410at 795.564 kb on - strandat 795.564 kb on - strandat 795.564 kb on - strandat 795.574 kb on + strandat 795.618 kb on + strand, within CA264_03415at 795.631 kb on - strand, within CA264_03415at 795.666 kb on + strand, within CA264_03415at 795.667 kb on - strand, within CA264_03415at 795.667 kb on - strand, within CA264_03415at 795.770 kb on + strand, within CA264_03415at 795.770 kb on + strand, within CA264_03415at 795.812 kb on + strand, within CA264_03415at 795.821 kb on - strand, within CA264_03415at 795.821 kb on - strand, within CA264_03415at 795.822 kb on + strand, within CA264_03415at 795.823 kb on - strand, within CA264_03415at 795.846 kb on - strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.873 kb on - strand, within CA264_03415at 795.873 kb on - strand, within CA264_03415at 795.892 kb on + strand, within CA264_03415at 795.892 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.895 kb on - strand, within CA264_03415at 795.904 kb on + strand, within CA264_03415at 795.935 kb on + strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.975 kb on - strand, within CA264_03415at 796.076 kb on + strand, within CA264_03415at 796.076 kb on + strand, within CA264_03415at 796.235 kb on - strand, within CA264_03415at 796.298 kb on - strand, within CA264_03415at 796.298 kb on - strand, within CA264_03415at 796.302 kb on + strand, within CA264_03415at 796.302 kb on + strand, within CA264_03415at 796.303 kb on - strand, within CA264_03415at 796.402 kb on + strandat 796.402 kb on + strandat 796.403 kb on - strandat 796.449 kb on + strandat 796.450 kb on - strandat 796.464 kb on - strandat 796.468 kb on + strandat 796.491 kb on + strandat 796.491 kb on + strandat 796.491 kb on + strandat 796.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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793,668 - CA264_03400 0.59 -0.7
793,844 - -0.4
793,892 - -0.2
793,903 + +1.0
793,904 - -0.6
793,906 - -0.9
793,929 - -0.6
793,968 + CA264_03405 0.14 -0.1
794,214 + CA264_03405 0.54 +0.7
794,215 - CA264_03405 0.54 -0.1
794,237 + CA264_03405 0.58 +0.4
794,237 + CA264_03405 0.58 +0.0
794,238 - CA264_03405 0.58 -0.5
794,251 - CA264_03405 0.60 -0.0
794,251 - CA264_03405 0.60 -0.1
794,255 + CA264_03405 0.60 -0.4
794,256 - CA264_03405 0.61 -2.2
794,257 + CA264_03405 0.61 -1.5
794,482 + -1.0
794,483 - -0.4
794,483 - +0.4
794,484 + -0.5
794,485 - +1.2
794,485 - +1.0
794,485 - -0.3
794,485 - +1.8
794,604 - -0.4
794,663 + +0.5
794,663 + -0.1
794,676 - CA264_03410 0.11 -0.0
794,720 + CA264_03410 0.15 -0.1
794,721 - CA264_03410 0.15 +1.9
794,769 + CA264_03410 0.21 +0.0
794,929 + CA264_03410 0.38 +0.0
794,929 + CA264_03410 0.38 +1.0
794,933 + CA264_03410 0.38 -0.6
794,933 + CA264_03410 0.38 -1.0
794,933 + CA264_03410 0.38 -0.1
794,934 - CA264_03410 0.39 +0.2
794,934 - CA264_03410 0.39 -1.1
794,934 - CA264_03410 0.39 -0.1
794,954 - CA264_03410 0.41 +0.9
794,954 - CA264_03410 0.41 +1.8
794,979 + CA264_03410 0.43 +0.2
795,001 - CA264_03410 0.46 +1.1
795,019 - CA264_03410 0.48 -0.5
795,020 + CA264_03410 0.48 +0.1
795,236 + CA264_03410 0.71 +0.5
795,236 + CA264_03410 0.71 +0.2
795,237 - CA264_03410 0.71 +0.9
795,283 + CA264_03410 0.76 +1.0
795,283 + CA264_03410 0.76 -0.3
795,294 - CA264_03410 0.78 +2.5
795,564 - +0.6
795,564 - -0.1
795,564 - +1.9
795,574 + +0.4
795,618 + CA264_03415 0.13 +0.1
795,631 - CA264_03415 0.14 +0.1
795,666 + CA264_03415 0.18 -0.1
795,667 - CA264_03415 0.18 -1.1
795,667 - CA264_03415 0.18 -0.7
795,770 + CA264_03415 0.28 -0.4
795,770 + CA264_03415 0.28 -0.3
795,812 + CA264_03415 0.32 -0.4
795,821 - CA264_03415 0.33 +0.3
795,821 - CA264_03415 0.33 -1.0
795,822 + CA264_03415 0.33 -1.0
795,823 - CA264_03415 0.33 +2.7
795,846 - CA264_03415 0.36 +0.4
795,872 + CA264_03415 0.38 -0.1
795,872 + CA264_03415 0.38 -1.5
795,872 + CA264_03415 0.38 -0.8
795,873 - CA264_03415 0.38 -0.3
795,873 - CA264_03415 0.38 +1.1
795,892 + CA264_03415 0.40 -0.3
795,892 + CA264_03415 0.40 -0.3
795,894 + CA264_03415 0.40 -0.2
795,894 + CA264_03415 0.40 -0.9
795,894 + CA264_03415 0.40 -0.8
795,895 - CA264_03415 0.41 +0.5
795,904 + CA264_03415 0.41 -1.7
795,935 + CA264_03415 0.45 +0.2
795,936 - CA264_03415 0.45 -0.3
795,936 - CA264_03415 0.45 +0.1
795,936 - CA264_03415 0.45 -0.4
795,936 - CA264_03415 0.45 +0.4
795,975 - CA264_03415 0.49 -0.3
796,076 + CA264_03415 0.59 -0.7
796,076 + CA264_03415 0.59 +1.0
796,235 - CA264_03415 0.74 +0.1
796,298 - CA264_03415 0.81 -0.7
796,298 - CA264_03415 0.81 +1.1
796,302 + CA264_03415 0.81 -0.5
796,302 + CA264_03415 0.81 -0.2
796,303 - CA264_03415 0.81 -0.0
796,402 + +0.1
796,402 + -2.2
796,403 - -0.1
796,449 + +0.4
796,450 - +0.2
796,464 - +1.2
796,468 + +2.3
796,491 + +0.5
796,491 + -0.1
796,491 + +0.0
796,492 - -0.9

Or see this region's nucleotide sequence