Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03335 and CA264_03340 are separated by 1 nucleotides CA264_03340 and CA264_03345 are separated by 545 nucleotides
CA264_03335: CA264_03335 - glyoxylate/hydroxypyruvate reductase A, at 781,307 to 782,236
_03335
CA264_03340: CA264_03340 - dioxygenase, at 782,238 to 782,651
_03340
CA264_03345: CA264_03345 - hypothetical protein, at 783,197 to 784,594
_03345
Position (kb) 782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 781.269 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.305 kb on - strand at 781.305 kb on - strand at 781.317 kb on + strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.320 kb on + strand at 781.321 kb on - strand at 781.323 kb on + strand at 781.324 kb on - strand at 781.327 kb on + strand at 781.328 kb on - strand at 781.472 kb on + strand, within CA264_03335 at 781.570 kb on - strand, within CA264_03335 at 781.646 kb on + strand, within CA264_03335 at 781.647 kb on - strand, within CA264_03335 at 781.688 kb on + strand, within CA264_03335 at 781.689 kb on - strand, within CA264_03335 at 781.689 kb on - strand, within CA264_03335 at 781.782 kb on + strand, within CA264_03335 at 781.827 kb on + strand, within CA264_03335 at 781.830 kb on - strand, within CA264_03335 at 781.918 kb on - strand, within CA264_03335 at 781.959 kb on - strand, within CA264_03335 at 781.963 kb on + strand, within CA264_03335 at 781.964 kb on - strand, within CA264_03335 at 782.166 kb on + strand at 782.174 kb on + strand at 782.234 kb on + strand at 782.235 kb on - strand at 782.235 kb on - strand at 782.296 kb on - strand, within CA264_03340 at 782.303 kb on + strand, within CA264_03340 at 782.304 kb on - strand, within CA264_03340 at 782.306 kb on - strand, within CA264_03340 at 782.409 kb on + strand, within CA264_03340 at 782.410 kb on - strand, within CA264_03340 at 782.422 kb on + strand, within CA264_03340 at 782.460 kb on - strand, within CA264_03340 at 782.480 kb on + strand, within CA264_03340 at 782.481 kb on - strand, within CA264_03340 at 782.513 kb on + strand, within CA264_03340 at 782.514 kb on - strand, within CA264_03340 at 782.536 kb on - strand, within CA264_03340 at 782.666 kb on + strand at 782.932 kb on - strand at 782.946 kb on + strand at 782.964 kb on + strand at 782.973 kb on + strand at 782.977 kb on + strand at 782.977 kb on + strand at 782.978 kb on - strand at 782.990 kb on + strand at 782.997 kb on + strand at 782.998 kb on - strand at 783.005 kb on - strand at 783.012 kb on + strand at 783.012 kb on + strand at 783.012 kb on + strand at 783.012 kb on + strand at 783.014 kb on + strand at 783.014 kb on + strand at 783.015 kb on - strand at 783.015 kb on - strand at 783.021 kb on - strand at 783.028 kb on - strand at 783.136 kb on + strand at 783.137 kb on - strand at 783.137 kb on - strand at 783.137 kb on - strand at 783.137 kb on - strand at 783.137 kb on - strand at 783.140 kb on - strand at 783.140 kb on - strand at 783.199 kb on - strand at 783.199 kb on - strand at 783.203 kb on - strand at 783.214 kb on + strand at 783.214 kb on + strand at 783.381 kb on - strand, within CA264_03345 at 783.381 kb on - strand, within CA264_03345 at 783.509 kb on + strand, within CA264_03345 at 783.603 kb on + strand, within CA264_03345 at 783.649 kb on - strand, within CA264_03345
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 781,269 + -0.2 781,304 + -0.0 781,304 + -0.1 781,304 + -0.1 781,305 - +1.4 781,305 - -1.2 781,317 + -0.8 781,318 - +0.4 781,318 - +0.8 781,318 - -0.1 781,318 - +0.2 781,320 + -1.3 781,321 - -0.2 781,323 + -1.8 781,324 - +0.2 781,327 + -0.4 781,328 - -1.3 781,472 + CA264_03335 0.18 -0.1 781,570 - CA264_03335 0.28 +0.1 781,646 + CA264_03335 0.36 -0.4 781,647 - CA264_03335 0.37 +0.1 781,688 + CA264_03335 0.41 -2.5 781,689 - CA264_03335 0.41 +0.4 781,689 - CA264_03335 0.41 -0.3 781,782 + CA264_03335 0.51 -0.4 781,827 + CA264_03335 0.56 -0.5 781,830 - CA264_03335 0.56 -0.2 781,918 - CA264_03335 0.66 -0.2 781,959 - CA264_03335 0.70 +1.1 781,963 + CA264_03335 0.71 -0.4 781,964 - CA264_03335 0.71 -0.6 782,166 + -0.2 782,174 + -0.3 782,234 + -0.1 782,235 - -0.1 782,235 - -1.2 782,296 - CA264_03340 0.14 -0.1 782,303 + CA264_03340 0.16 +1.4 782,304 - CA264_03340 0.16 +0.7 782,306 - CA264_03340 0.16 -0.8 782,409 + CA264_03340 0.41 -0.3 782,410 - CA264_03340 0.42 +1.2 782,422 + CA264_03340 0.44 -0.1 782,460 - CA264_03340 0.54 +0.5 782,480 + CA264_03340 0.58 +0.5 782,481 - CA264_03340 0.59 +1.0 782,513 + CA264_03340 0.66 -0.4 782,514 - CA264_03340 0.67 -0.1 782,536 - CA264_03340 0.72 -0.4 782,666 + -0.3 782,932 - +0.9 782,946 + -1.2 782,964 + -0.4 782,973 + -0.3 782,977 + -0.4 782,977 + -0.1 782,978 - +0.0 782,990 + +0.3 782,997 + -1.3 782,998 - -0.5 783,005 - +0.4 783,012 + +2.0 783,012 + +0.1 783,012 + -1.0 783,012 + -0.6 783,014 + -0.5 783,014 + +0.3 783,015 - -0.7 783,015 - +0.0 783,021 - -0.1 783,028 - +0.6 783,136 + +0.7 783,137 - +1.3 783,137 - -0.8 783,137 - -0.4 783,137 - -0.3 783,137 - -0.7 783,140 - +0.7 783,140 - +0.9 783,199 - -2.0 783,199 - +1.4 783,203 - -0.0 783,214 + +1.7 783,214 + +0.4 783,381 - CA264_03345 0.13 -0.4 783,381 - CA264_03345 0.13 +0.5 783,509 + CA264_03345 0.22 -1.5 783,603 + CA264_03345 0.29 -0.8 783,649 - CA264_03345 0.32 +1.0
Or see this region's nucleotide sequence