Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03265

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03260 and CA264_03265 are separated by 29 nucleotidesCA264_03265 and CA264_03270 are separated by 330 nucleotidesCA264_03270 and CA264_03275 overlap by 14 nucleotides CA264_03260: CA264_03260 - MBL fold hydrolase, at 767,197 to 768,039 _03260 CA264_03265: CA264_03265 - N-acyl-D-amino acid deacylase, at 768,069 to 769,640 _03265 CA264_03270: CA264_03270 - hypothetical protein, at 769,971 to 770,228 _03270 CA264_03275: CA264_03275 - ribokinase, at 770,215 to 771,165 _03275 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1 2at 767.085 kb on - strandat 767.132 kb on + strandat 767.140 kb on + strandat 767.141 kb on - strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.206 kb on + strandat 767.207 kb on - strandat 767.221 kb on - strandat 767.232 kb on + strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.362 kb on - strand, within CA264_03260at 767.424 kb on - strand, within CA264_03260at 767.431 kb on + strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.592 kb on + strand, within CA264_03260at 767.623 kb on - strand, within CA264_03260at 767.729 kb on - strand, within CA264_03260at 767.729 kb on - strand, within CA264_03260at 767.731 kb on + strand, within CA264_03260at 767.732 kb on - strand, within CA264_03260at 767.803 kb on + strand, within CA264_03260at 767.803 kb on + strand, within CA264_03260at 767.804 kb on - strand, within CA264_03260at 767.804 kb on - strand, within CA264_03260at 767.856 kb on + strand, within CA264_03260at 767.857 kb on - strand, within CA264_03260at 767.857 kb on - strand, within CA264_03260at 767.991 kb on - strandat 768.026 kb on + strandat 768.026 kb on + strandat 768.026 kb on + strandat 768.027 kb on - strandat 768.033 kb on - strandat 768.038 kb on - strandat 768.038 kb on - strandat 768.051 kb on - strandat 768.199 kb on + strandat 768.231 kb on - strand, within CA264_03265at 768.267 kb on - strand, within CA264_03265at 768.269 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.491 kb on - strand, within CA264_03265at 768.517 kb on - strand, within CA264_03265at 768.589 kb on + strand, within CA264_03265at 768.589 kb on + strand, within CA264_03265at 768.590 kb on - strand, within CA264_03265at 768.590 kb on - strand, within CA264_03265at 768.607 kb on - strand, within CA264_03265at 768.607 kb on - strand, within CA264_03265at 768.652 kb on + strand, within CA264_03265at 768.652 kb on + strand, within CA264_03265at 768.757 kb on + strand, within CA264_03265at 768.758 kb on - strand, within CA264_03265at 768.763 kb on + strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.767 kb on + strand, within CA264_03265at 768.767 kb on + strand, within CA264_03265at 768.768 kb on - strand, within CA264_03265at 768.873 kb on - strand, within CA264_03265at 768.873 kb on - strand, within CA264_03265at 768.912 kb on + strand, within CA264_03265at 768.913 kb on - strand, within CA264_03265at 768.925 kb on - strand, within CA264_03265at 768.925 kb on - strand, within CA264_03265at 768.928 kb on + strand, within CA264_03265at 768.929 kb on - strand, within CA264_03265at 768.982 kb on - strand, within CA264_03265at 768.984 kb on + strand, within CA264_03265at 768.985 kb on - strand, within CA264_03265at 769.003 kb on - strand, within CA264_03265at 769.022 kb on - strand, within CA264_03265at 769.025 kb on - strand, within CA264_03265at 769.036 kb on + strand, within CA264_03265at 769.037 kb on - strand, within CA264_03265at 769.037 kb on - strand, within CA264_03265at 769.364 kb on + strand, within CA264_03265at 769.365 kb on - strand, within CA264_03265at 769.386 kb on + strand, within CA264_03265at 769.386 kb on + strand, within CA264_03265at 769.405 kb on + strand, within CA264_03265at 769.494 kb on + strandat 769.495 kb on - strandat 769.512 kb on + strandat 769.525 kb on + strandat 769.530 kb on + strandat 769.648 kb on + strandat 769.648 kb on + strandat 769.649 kb on - strandat 769.651 kb on - strandat 769.667 kb on + strandat 769.668 kb on - strandat 769.680 kb on - strandat 769.680 kb on - strandat 769.686 kb on + strandat 769.735 kb on + strandat 769.736 kb on - strandat 769.736 kb on - strandat 769.736 kb on - strandat 769.752 kb on + strandat 769.755 kb on - strandat 769.835 kb on + strandat 769.873 kb on - strandat 769.877 kb on + strandat 769.877 kb on + strandat 769.877 kb on + strandat 769.877 kb on + strandat 769.877 kb on + strandat 769.877 kb on + strandat 769.878 kb on - strandat 769.878 kb on - strandat 769.879 kb on + strandat 769.879 kb on + strandat 769.880 kb on - strandat 769.880 kb on - strandat 769.880 kb on - strandat 769.914 kb on + strandat 769.925 kb on + strandat 769.946 kb on + strandat 769.946 kb on + strandat 770.039 kb on + strand, within CA264_03270at 770.039 kb on + strand, within CA264_03270at 770.132 kb on - strand, within CA264_03270at 770.169 kb on - strand, within CA264_03270at 770.188 kb on - strand, within CA264_03270at 770.200 kb on + strand, within CA264_03270at 770.201 kb on - strand, within CA264_03270at 770.204 kb on + strandat 770.224 kb on + strandat 770.225 kb on - strandat 770.295 kb on - strandat 770.442 kb on + strand, within CA264_03275at 770.442 kb on + strand, within CA264_03275at 770.442 kb on + strand, within CA264_03275at 770.442 kb on + strand, within CA264_03275at 770.610 kb on + strand, within CA264_03275at 770.626 kb on - strand, within CA264_03275at 770.627 kb on + strand, within CA264_03275at 770.627 kb on + strand, within CA264_03275at 770.627 kb on + strand, within CA264_03275at 770.631 kb on - strand, within CA264_03275

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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767,085 - +0.1
767,132 + -0.1
767,140 + +1.2
767,141 - -0.2
767,167 + -1.0
767,167 + +1.8
767,167 + +0.5
767,206 + +0.7
767,207 - -1.2
767,221 - +0.3
767,232 + +0.7
767,249 - -1.7
767,249 - -0.3
767,249 - -0.4
767,362 - CA264_03260 0.20 -1.0
767,424 - CA264_03260 0.27 -1.5
767,431 + CA264_03260 0.28 -0.1
767,436 - CA264_03260 0.28 -0.5
767,436 - CA264_03260 0.28 +0.0
767,436 - CA264_03260 0.28 -1.5
767,592 + CA264_03260 0.47 +0.1
767,623 - CA264_03260 0.51 +0.1
767,729 - CA264_03260 0.63 +0.0
767,729 - CA264_03260 0.63 +0.9
767,731 + CA264_03260 0.63 -0.2
767,732 - CA264_03260 0.63 +0.8
767,803 + CA264_03260 0.72 -0.6
767,803 + CA264_03260 0.72 -0.0
767,804 - CA264_03260 0.72 +0.0
767,804 - CA264_03260 0.72 -0.4
767,856 + CA264_03260 0.78 -0.2
767,857 - CA264_03260 0.78 +0.7
767,857 - CA264_03260 0.78 +0.7
767,991 - -0.2
768,026 + +0.5
768,026 + +0.8
768,026 + -0.0
768,027 - -0.4
768,033 - +1.6
768,038 - -0.6
768,038 - -1.1
768,051 - -0.2
768,199 + +1.0
768,231 - CA264_03265 0.10 -0.4
768,267 - CA264_03265 0.13 -0.8
768,269 + CA264_03265 0.13 -1.0
768,361 + CA264_03265 0.19 -0.0
768,361 + CA264_03265 0.19 -0.9
768,361 + CA264_03265 0.19 +0.3
768,361 + CA264_03265 0.19 +0.2
768,362 - CA264_03265 0.19 -0.8
768,362 - CA264_03265 0.19 +1.0
768,362 - CA264_03265 0.19 +0.3
768,491 - CA264_03265 0.27 -0.3
768,517 - CA264_03265 0.28 +1.0
768,589 + CA264_03265 0.33 +0.1
768,589 + CA264_03265 0.33 +0.1
768,590 - CA264_03265 0.33 -0.4
768,590 - CA264_03265 0.33 +0.6
768,607 - CA264_03265 0.34 -0.6
768,607 - CA264_03265 0.34 +0.5
768,652 + CA264_03265 0.37 +0.4
768,652 + CA264_03265 0.37 +0.6
768,757 + CA264_03265 0.44 +0.6
768,758 - CA264_03265 0.44 -0.5
768,763 + CA264_03265 0.44 -0.2
768,764 - CA264_03265 0.44 +0.9
768,764 - CA264_03265 0.44 -0.3
768,764 - CA264_03265 0.44 +0.0
768,764 - CA264_03265 0.44 -1.2
768,767 + CA264_03265 0.44 -0.9
768,767 + CA264_03265 0.44 +0.5
768,768 - CA264_03265 0.44 -0.8
768,873 - CA264_03265 0.51 -0.3
768,873 - CA264_03265 0.51 +0.7
768,912 + CA264_03265 0.54 +0.5
768,913 - CA264_03265 0.54 +0.2
768,925 - CA264_03265 0.54 +1.2
768,925 - CA264_03265 0.54 -1.2
768,928 + CA264_03265 0.55 +0.0
768,929 - CA264_03265 0.55 -0.3
768,982 - CA264_03265 0.58 -0.1
768,984 + CA264_03265 0.58 +0.4
768,985 - CA264_03265 0.58 +0.3
769,003 - CA264_03265 0.59 +1.7
769,022 - CA264_03265 0.61 -1.1
769,025 - CA264_03265 0.61 -0.0
769,036 + CA264_03265 0.62 +1.0
769,037 - CA264_03265 0.62 -0.2
769,037 - CA264_03265 0.62 +0.7
769,364 + CA264_03265 0.82 +0.4
769,365 - CA264_03265 0.82 +0.8
769,386 + CA264_03265 0.84 +0.9
769,386 + CA264_03265 0.84 +0.6
769,405 + CA264_03265 0.85 +0.7
769,494 + +1.3
769,495 - -0.4
769,512 + +1.2
769,525 + +0.3
769,530 + +0.5
769,648 + +0.6
769,648 + +0.1
769,649 - -0.5
769,651 - -0.5
769,667 + -0.3
769,668 - -1.3
769,680 - +1.4
769,680 - +1.7
769,686 + +0.9
769,735 + +0.2
769,736 - -1.3
769,736 - +0.1
769,736 - +0.2
769,752 + -0.8
769,755 - -0.4
769,835 + +1.3
769,873 - +0.0
769,877 + +0.2
769,877 + -0.3
769,877 + +0.8
769,877 + +0.8
769,877 + +1.9
769,877 + +1.0
769,878 - -0.4
769,878 - -0.0
769,879 + -1.2
769,879 + +1.4
769,880 - +0.3
769,880 - +0.6
769,880 - -0.2
769,914 + +0.0
769,925 + +0.6
769,946 + +0.7
769,946 + -0.0
770,039 + CA264_03270 0.26 +1.5
770,039 + CA264_03270 0.26 -0.7
770,132 - CA264_03270 0.62 -0.1
770,169 - CA264_03270 0.77 +1.1
770,188 - CA264_03270 0.84 -1.0
770,200 + CA264_03270 0.89 -0.6
770,201 - CA264_03270 0.89 -0.4
770,204 + -0.5
770,224 + -0.1
770,225 - -0.1
770,295 - -1.3
770,442 + CA264_03275 0.24 -0.2
770,442 + CA264_03275 0.24 +0.6
770,442 + CA264_03275 0.24 +0.1
770,442 + CA264_03275 0.24 -0.0
770,610 + CA264_03275 0.42 -0.0
770,626 - CA264_03275 0.43 -0.2
770,627 + CA264_03275 0.43 +0.3
770,627 + CA264_03275 0.43 +0.0
770,627 + CA264_03275 0.43 -1.6
770,631 - CA264_03275 0.44 +0.2

Or see this region's nucleotide sequence