Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03250

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03240 and CA264_03245 are separated by 44 nucleotidesCA264_03245 and CA264_03250 are separated by 38 nucleotidesCA264_03250 and CA264_03255 are separated by 161 nucleotidesCA264_03255 and CA264_03260 are separated by 192 nucleotides CA264_03240: CA264_03240 - metal transporter, at 762,772 to 764,670 _03240 CA264_03245: CA264_03245 - four helix bundle protein, at 764,715 to 765,092 _03245 CA264_03250: CA264_03250 - metal transporter, at 765,131 to 766,405 _03250 CA264_03255: CA264_03255 - hypothetical protein, at 766,567 to 767,004 _03255 CA264_03260: CA264_03260 - MBL fold hydrolase, at 767,197 to 768,039 _03260 Position (kb) 765 766 767Strain fitness (log2 ratio) -2 -1 0 1 2at 764.147 kb on - strand, within CA264_03240at 764.212 kb on + strand, within CA264_03240at 764.245 kb on - strand, within CA264_03240at 764.269 kb on - strand, within CA264_03240at 764.493 kb on + strandat 764.493 kb on + strandat 764.497 kb on + strandat 764.498 kb on - strandat 764.498 kb on - strandat 764.498 kb on - strandat 764.499 kb on + strandat 764.499 kb on + strandat 764.592 kb on + strandat 764.790 kb on - strand, within CA264_03245at 764.799 kb on - strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.871 kb on + strand, within CA264_03245at 764.968 kb on - strand, within CA264_03245at 764.973 kb on - strand, within CA264_03245at 765.077 kb on + strandat 765.402 kb on - strand, within CA264_03250at 765.412 kb on + strand, within CA264_03250at 765.442 kb on - strand, within CA264_03250at 765.483 kb on - strand, within CA264_03250at 765.726 kb on + strand, within CA264_03250at 765.727 kb on - strand, within CA264_03250at 765.727 kb on - strand, within CA264_03250at 765.772 kb on + strand, within CA264_03250at 765.772 kb on + strand, within CA264_03250at 765.816 kb on + strand, within CA264_03250at 765.816 kb on + strand, within CA264_03250at 765.816 kb on + strand, within CA264_03250at 765.817 kb on - strand, within CA264_03250at 765.817 kb on - strand, within CA264_03250at 765.817 kb on - strand, within CA264_03250at 765.819 kb on + strand, within CA264_03250at 765.820 kb on - strand, within CA264_03250at 765.824 kb on - strand, within CA264_03250at 765.830 kb on - strand, within CA264_03250at 765.924 kb on + strand, within CA264_03250at 765.924 kb on + strand, within CA264_03250at 765.979 kb on + strand, within CA264_03250at 765.980 kb on - strand, within CA264_03250at 765.998 kb on + strand, within CA264_03250at 766.095 kb on + strand, within CA264_03250at 766.095 kb on + strand, within CA264_03250at 766.095 kb on + strand, within CA264_03250at 766.125 kb on + strand, within CA264_03250at 766.129 kb on + strand, within CA264_03250at 766.129 kb on + strand, within CA264_03250at 766.130 kb on - strand, within CA264_03250at 766.130 kb on - strand, within CA264_03250at 766.164 kb on + strand, within CA264_03250at 766.165 kb on - strand, within CA264_03250at 766.165 kb on - strand, within CA264_03250at 766.225 kb on + strand, within CA264_03250at 766.299 kb on - strandat 766.304 kb on - strandat 766.340 kb on + strandat 766.389 kb on - strandat 766.392 kb on - strandat 766.635 kb on - strand, within CA264_03255at 766.879 kb on - strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.981 kb on + strandat 767.012 kb on - strandat 767.012 kb on - strandat 767.032 kb on + strandat 767.032 kb on + strandat 767.032 kb on + strandat 767.033 kb on - strandat 767.033 kb on - strandat 767.085 kb on - strandat 767.132 kb on + strandat 767.140 kb on + strandat 767.141 kb on - strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.206 kb on + strandat 767.207 kb on - strandat 767.221 kb on - strandat 767.232 kb on + strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.362 kb on - strand, within CA264_03260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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764,147 - CA264_03240 0.72 +0.0
764,212 + CA264_03240 0.76 +0.3
764,245 - CA264_03240 0.78 -0.2
764,269 - CA264_03240 0.79 -1.5
764,493 + +0.9
764,493 + +0.3
764,497 + -0.8
764,498 - -1.0
764,498 - -1.0
764,498 - -1.1
764,499 + -0.2
764,499 + -0.8
764,592 + -0.7
764,790 - CA264_03245 0.20 -1.2
764,799 - CA264_03245 0.22 -0.5
764,867 + CA264_03245 0.40 -1.0
764,867 + CA264_03245 0.40 +0.5
764,867 + CA264_03245 0.40 -0.4
764,868 - CA264_03245 0.40 -1.5
764,868 - CA264_03245 0.40 -2.6
764,868 - CA264_03245 0.40 -0.8
764,868 - CA264_03245 0.40 -1.1
764,871 + CA264_03245 0.41 +0.4
764,968 - CA264_03245 0.67 -1.2
764,973 - CA264_03245 0.68 -1.3
765,077 + -0.8
765,402 - CA264_03250 0.21 -2.3
765,412 + CA264_03250 0.22 -0.2
765,442 - CA264_03250 0.24 -1.7
765,483 - CA264_03250 0.28 -1.1
765,726 + CA264_03250 0.47 -1.0
765,727 - CA264_03250 0.47 -0.6
765,727 - CA264_03250 0.47 -2.1
765,772 + CA264_03250 0.50 +0.9
765,772 + CA264_03250 0.50 -0.8
765,816 + CA264_03250 0.54 +0.6
765,816 + CA264_03250 0.54 -0.1
765,816 + CA264_03250 0.54 -0.4
765,817 - CA264_03250 0.54 -0.2
765,817 - CA264_03250 0.54 -0.3
765,817 - CA264_03250 0.54 -1.7
765,819 + CA264_03250 0.54 +0.2
765,820 - CA264_03250 0.54 -1.2
765,824 - CA264_03250 0.54 -0.2
765,830 - CA264_03250 0.55 -0.6
765,924 + CA264_03250 0.62 -0.6
765,924 + CA264_03250 0.62 -0.8
765,979 + CA264_03250 0.67 +0.8
765,980 - CA264_03250 0.67 -1.4
765,998 + CA264_03250 0.68 +1.0
766,095 + CA264_03250 0.76 -0.6
766,095 + CA264_03250 0.76 +0.2
766,095 + CA264_03250 0.76 -1.3
766,125 + CA264_03250 0.78 -0.5
766,129 + CA264_03250 0.78 -0.7
766,129 + CA264_03250 0.78 -0.0
766,130 - CA264_03250 0.78 -0.2
766,130 - CA264_03250 0.78 -1.6
766,164 + CA264_03250 0.81 -1.7
766,165 - CA264_03250 0.81 -0.5
766,165 - CA264_03250 0.81 +0.5
766,225 + CA264_03250 0.86 +0.2
766,299 - -1.0
766,304 - -0.6
766,340 + -0.5
766,389 - +0.3
766,392 - +0.7
766,635 - CA264_03255 0.16 -1.2
766,879 - CA264_03255 0.71 +0.4
766,920 + CA264_03255 0.81 +0.3
766,920 + CA264_03255 0.81 -0.6
766,920 + CA264_03255 0.81 -0.6
766,920 + CA264_03255 0.81 +0.1
766,921 - CA264_03255 0.81 -0.7
766,921 - CA264_03255 0.81 +0.8
766,921 - CA264_03255 0.81 +0.2
766,921 - CA264_03255 0.81 -0.4
766,981 + +0.9
767,012 - -1.6
767,012 - -0.6
767,032 + +0.2
767,032 + -0.1
767,032 + +0.4
767,033 - -0.7
767,033 - -0.8
767,085 - +0.1
767,132 + -0.1
767,140 + +1.2
767,141 - -0.2
767,167 + -1.0
767,167 + +1.8
767,167 + +0.5
767,206 + +0.7
767,207 - -1.2
767,221 - +0.3
767,232 + +0.7
767,249 - -1.7
767,249 - -0.3
767,249 - -0.4
767,362 - CA264_03260 0.20 -1.0

Or see this region's nucleotide sequence