Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02875

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02865 and CA264_02870 are separated by 71 nucleotidesCA264_02870 and CA264_02875 are separated by 91 nucleotidesCA264_02875 and CA264_02880 are separated by 33 nucleotidesCA264_02880 and CA264_02885 are separated by 35 nucleotides CA264_02865: CA264_02865 - fatty acid hydroxylase, at 656,100 to 657,062 _02865 CA264_02870: CA264_02870 - hypothetical protein, at 657,134 to 657,571 _02870 CA264_02875: CA264_02875 - hypothetical protein, at 657,663 to 658,712 _02875 CA264_02880: CA264_02880 - hypothetical protein, at 658,746 to 658,949 _02880 CA264_02885: CA264_02885 - hypothetical protein, at 658,985 to 659,710 _02885 Position (kb) 657 658 659Strain fitness (log2 ratio) -2 -1 0 1 2 3at 656.670 kb on + strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.681 kb on + strand, within CA264_02865at 656.724 kb on + strand, within CA264_02865at 656.739 kb on + strand, within CA264_02865at 656.740 kb on - strand, within CA264_02865at 656.804 kb on - strand, within CA264_02865at 656.837 kb on + strand, within CA264_02865at 656.838 kb on - strand, within CA264_02865at 656.847 kb on + strand, within CA264_02865at 656.930 kb on + strand, within CA264_02865at 657.033 kb on + strandat 657.060 kb on + strandat 657.081 kb on + strandat 657.081 kb on + strandat 657.082 kb on - strandat 657.082 kb on - strandat 657.096 kb on - strandat 657.096 kb on - strandat 657.136 kb on - strandat 657.136 kb on - strandat 657.136 kb on - strandat 657.138 kb on + strandat 657.139 kb on - strandat 657.139 kb on - strandat 657.139 kb on - strandat 657.231 kb on + strand, within CA264_02870at 657.266 kb on + strand, within CA264_02870at 657.266 kb on + strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.549 kb on - strandat 657.607 kb on + strandat 657.608 kb on - strandat 657.656 kb on - strandat 657.656 kb on - strandat 657.664 kb on + strandat 657.682 kb on + strandat 657.733 kb on + strandat 657.734 kb on - strandat 657.734 kb on - strandat 657.899 kb on - strand, within CA264_02875at 657.899 kb on - strand, within CA264_02875at 657.899 kb on - strand, within CA264_02875at 657.905 kb on + strand, within CA264_02875at 657.985 kb on + strand, within CA264_02875at 658.042 kb on + strand, within CA264_02875at 658.044 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.094 kb on - strand, within CA264_02875at 658.381 kb on + strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.423 kb on + strand, within CA264_02875at 658.482 kb on - strand, within CA264_02875at 658.556 kb on + strand, within CA264_02875at 658.578 kb on + strand, within CA264_02875at 658.579 kb on - strand, within CA264_02875at 658.579 kb on - strand, within CA264_02875at 658.592 kb on - strand, within CA264_02875at 658.719 kb on - strandat 658.719 kb on - strandat 658.719 kb on - strandat 658.748 kb on - strandat 658.785 kb on - strand, within CA264_02880at 658.793 kb on + strand, within CA264_02880at 658.794 kb on - strand, within CA264_02880at 658.965 kb on - strandat 658.979 kb on - strandat 658.979 kb on - strandat 658.982 kb on - strandat 659.001 kb on + strandat 659.005 kb on + strandat 659.005 kb on + strandat 659.006 kb on - strandat 659.006 kb on - strandat 659.007 kb on + strandat 659.172 kb on + strand, within CA264_02885at 659.188 kb on + strand, within CA264_02885at 659.189 kb on - strand, within CA264_02885at 659.244 kb on - strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.410 kb on + strand, within CA264_02885at 659.415 kb on + strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.421 kb on + strand, within CA264_02885at 659.422 kb on - strand, within CA264_02885at 659.474 kb on - strand, within CA264_02885at 659.642 kb on - strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.670 kb on - strandat 659.695 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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656,670 + CA264_02865 0.59 -0.1
656,671 - CA264_02865 0.59 +0.4
656,671 - CA264_02865 0.59 -0.4
656,671 - CA264_02865 0.59 +0.2
656,671 - CA264_02865 0.59 +1.6
656,681 + CA264_02865 0.60 -0.8
656,724 + CA264_02865 0.65 +1.6
656,739 + CA264_02865 0.66 -0.8
656,740 - CA264_02865 0.66 +0.0
656,804 - CA264_02865 0.73 +0.5
656,837 + CA264_02865 0.77 +0.4
656,838 - CA264_02865 0.77 -0.5
656,847 + CA264_02865 0.78 +0.6
656,930 + CA264_02865 0.86 -0.6
657,033 + -0.4
657,060 + -0.4
657,081 + +0.4
657,081 + +0.3
657,082 - -0.7
657,082 - -0.2
657,096 - +0.6
657,096 - -0.4
657,136 - -0.4
657,136 - -0.1
657,136 - -1.7
657,138 + -0.0
657,139 - -0.7
657,139 - +1.8
657,139 - +0.7
657,231 + CA264_02870 0.22 +0.1
657,266 + CA264_02870 0.30 -1.6
657,266 + CA264_02870 0.30 -0.6
657,267 - CA264_02870 0.30 -0.3
657,267 - CA264_02870 0.30 -0.3
657,267 - CA264_02870 0.30 -0.5
657,549 - -1.7
657,607 + -0.7
657,608 - +0.1
657,656 - -1.6
657,656 - -0.2
657,664 + -2.0
657,682 + +0.3
657,733 + -0.3
657,734 - -0.1
657,734 - +1.0
657,899 - CA264_02875 0.22 +1.2
657,899 - CA264_02875 0.22 +0.0
657,899 - CA264_02875 0.22 +1.4
657,905 + CA264_02875 0.23 -0.4
657,985 + CA264_02875 0.31 +0.1
658,042 + CA264_02875 0.36 -0.1
658,044 + CA264_02875 0.36 +3.0
658,093 + CA264_02875 0.41 +0.9
658,093 + CA264_02875 0.41 -0.7
658,093 + CA264_02875 0.41 +1.4
658,094 - CA264_02875 0.41 +0.5
658,381 + CA264_02875 0.68 +0.2
658,382 - CA264_02875 0.68 -0.1
658,382 - CA264_02875 0.68 -0.5
658,382 - CA264_02875 0.68 +0.7
658,382 - CA264_02875 0.68 +1.0
658,382 - CA264_02875 0.68 -1.5
658,382 - CA264_02875 0.68 +0.2
658,382 - CA264_02875 0.68 +0.4
658,423 + CA264_02875 0.72 -0.1
658,482 - CA264_02875 0.78 -1.0
658,556 + CA264_02875 0.85 +0.2
658,578 + CA264_02875 0.87 -0.1
658,579 - CA264_02875 0.87 -0.3
658,579 - CA264_02875 0.87 -0.5
658,592 - CA264_02875 0.88 +0.9
658,719 - -0.1
658,719 - +0.5
658,719 - +0.8
658,748 - +0.1
658,785 - CA264_02880 0.19 -0.6
658,793 + CA264_02880 0.23 +0.0
658,794 - CA264_02880 0.24 +0.0
658,965 - +1.0
658,979 - +0.0
658,979 - -0.7
658,982 - -0.2
659,001 + -0.1
659,005 + +0.8
659,005 + -1.7
659,006 - -0.4
659,006 - -0.4
659,007 + -0.2
659,172 + CA264_02885 0.26 -0.5
659,188 + CA264_02885 0.28 -0.5
659,189 - CA264_02885 0.28 -0.1
659,244 - CA264_02885 0.36 +0.5
659,247 + CA264_02885 0.36 +0.7
659,247 + CA264_02885 0.36 +1.4
659,248 - CA264_02885 0.36 -0.0
659,248 - CA264_02885 0.36 +1.1
659,248 - CA264_02885 0.36 -1.3
659,248 - CA264_02885 0.36 +0.2
659,248 - CA264_02885 0.36 +0.0
659,392 - CA264_02885 0.56 +0.2
659,392 - CA264_02885 0.56 -0.1
659,410 + CA264_02885 0.59 -0.5
659,415 + CA264_02885 0.59 -1.1
659,416 - CA264_02885 0.59 -0.2
659,416 - CA264_02885 0.59 -0.1
659,417 + CA264_02885 0.60 +0.5
659,417 + CA264_02885 0.60 -0.7
659,417 + CA264_02885 0.60 +2.1
659,421 + CA264_02885 0.60 +0.1
659,422 - CA264_02885 0.60 -0.7
659,474 - CA264_02885 0.67 +0.2
659,642 - -0.2
659,669 + -0.7
659,669 + +0.9
659,669 + -0.1
659,669 + -0.2
659,670 - -0.8
659,695 - -0.4
659,709 - -1.3
659,709 - -0.2
659,709 - -0.1

Or see this region's nucleotide sequence