Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02760

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02755 and CA264_02760 are separated by 228 nucleotidesCA264_02760 and CA264_02765 are separated by 273 nucleotides CA264_02755: CA264_02755 - PKD domain-containing protein, at 635,832 to 637,178 _02755 CA264_02760: CA264_02760 - hypothetical protein, at 637,407 to 638,078 _02760 CA264_02765: CA264_02765 - hypothetical protein, at 638,352 to 638,915 _02765 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.541 kb on + strand, within CA264_02755at 636.549 kb on + strand, within CA264_02755at 636.550 kb on - strand, within CA264_02755at 636.550 kb on - strand, within CA264_02755at 636.585 kb on + strand, within CA264_02755at 636.654 kb on + strand, within CA264_02755at 636.655 kb on - strand, within CA264_02755at 636.742 kb on - strand, within CA264_02755at 636.807 kb on + strand, within CA264_02755at 636.808 kb on - strand, within CA264_02755at 636.832 kb on + strand, within CA264_02755at 636.832 kb on + strand, within CA264_02755at 636.833 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.897 kb on - strand, within CA264_02755at 636.897 kb on - strand, within CA264_02755at 636.962 kb on - strand, within CA264_02755at 636.976 kb on + strand, within CA264_02755at 636.976 kb on + strand, within CA264_02755at 637.000 kb on + strand, within CA264_02755at 637.001 kb on - strand, within CA264_02755at 637.003 kb on + strand, within CA264_02755at 637.054 kb on + strandat 637.054 kb on + strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.112 kb on - strandat 637.149 kb on + strandat 637.155 kb on - strandat 637.187 kb on - strandat 637.199 kb on + strandat 637.200 kb on - strandat 637.233 kb on + strandat 637.243 kb on + strandat 637.248 kb on + strandat 637.249 kb on - strandat 637.332 kb on + strandat 637.333 kb on - strandat 637.333 kb on - strandat 637.335 kb on - strandat 637.341 kb on - strandat 637.354 kb on + strandat 637.370 kb on + strandat 637.370 kb on + strandat 637.371 kb on - strandat 637.374 kb on + strandat 637.375 kb on - strandat 637.375 kb on - strandat 637.375 kb on - strandat 637.380 kb on - strandat 637.388 kb on + strandat 637.406 kb on + strandat 637.482 kb on - strand, within CA264_02760at 637.502 kb on + strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.567 kb on + strand, within CA264_02760at 637.648 kb on + strand, within CA264_02760at 637.648 kb on + strand, within CA264_02760at 637.653 kb on + strand, within CA264_02760at 637.654 kb on - strand, within CA264_02760at 637.668 kb on + strand, within CA264_02760at 637.671 kb on - strand, within CA264_02760at 637.730 kb on - strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.746 kb on + strand, within CA264_02760at 637.831 kb on - strand, within CA264_02760at 637.938 kb on + strand, within CA264_02760at 637.938 kb on + strand, within CA264_02760at 637.939 kb on - strand, within CA264_02760at 637.939 kb on - strand, within CA264_02760at 637.997 kb on + strand, within CA264_02760at 638.012 kb on + strandat 638.013 kb on - strandat 638.054 kb on - strandat 638.054 kb on - strandat 638.077 kb on - strandat 638.090 kb on - strandat 638.232 kb on + strandat 638.233 kb on - strandat 638.235 kb on - strandat 638.236 kb on + strandat 638.269 kb on - strandat 638.301 kb on - strandat 638.302 kb on + strandat 638.472 kb on + strand, within CA264_02765at 638.472 kb on + strand, within CA264_02765at 638.473 kb on - strand, within CA264_02765at 638.544 kb on + strand, within CA264_02765at 638.583 kb on - strand, within CA264_02765at 638.614 kb on - strand, within CA264_02765at 638.649 kb on - strand, within CA264_02765at 638.667 kb on + strand, within CA264_02765at 638.667 kb on + strand, within CA264_02765at 638.668 kb on - strand, within CA264_02765at 638.746 kb on + strand, within CA264_02765at 638.747 kb on - strand, within CA264_02765at 638.747 kb on - strand, within CA264_02765at 638.998 kb on + strandat 639.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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636,541 + CA264_02755 0.53 -0.1
636,549 + CA264_02755 0.53 -0.1
636,550 - CA264_02755 0.53 +0.7
636,550 - CA264_02755 0.53 +0.9
636,585 + CA264_02755 0.56 +0.2
636,654 + CA264_02755 0.61 +1.6
636,655 - CA264_02755 0.61 -0.9
636,742 - CA264_02755 0.68 +0.8
636,807 + CA264_02755 0.72 +0.3
636,808 - CA264_02755 0.72 -0.3
636,832 + CA264_02755 0.74 +0.2
636,832 + CA264_02755 0.74 -0.4
636,833 - CA264_02755 0.74 -0.1
636,836 - CA264_02755 0.75 +0.0
636,836 - CA264_02755 0.75 +0.2
636,836 - CA264_02755 0.75 +0.1
636,836 - CA264_02755 0.75 +0.8
636,893 - CA264_02755 0.79 -0.1
636,893 - CA264_02755 0.79 -0.2
636,893 - CA264_02755 0.79 -0.6
636,897 - CA264_02755 0.79 +0.4
636,897 - CA264_02755 0.79 +0.2
636,962 - CA264_02755 0.84 -0.6
636,976 + CA264_02755 0.85 -0.8
636,976 + CA264_02755 0.85 +1.1
637,000 + CA264_02755 0.87 -0.7
637,001 - CA264_02755 0.87 -0.9
637,003 + CA264_02755 0.87 -0.0
637,054 + +0.2
637,054 + +0.4
637,055 - -0.8
637,055 - +0.4
637,055 - -0.1
637,055 - -0.2
637,112 - -1.6
637,149 + -0.0
637,155 - +1.4
637,187 - -0.8
637,199 + +0.4
637,200 - +1.1
637,233 + +0.6
637,243 + -0.3
637,248 + -0.3
637,249 - -1.5
637,332 + +0.1
637,333 - -0.5
637,333 - -0.7
637,335 - -0.0
637,341 - +0.2
637,354 + +0.5
637,370 + +0.0
637,370 + -0.3
637,371 - +0.2
637,374 + -2.3
637,375 - -0.3
637,375 - -0.9
637,375 - -0.2
637,380 - +0.6
637,388 + +0.2
637,406 + -0.1
637,482 - CA264_02760 0.11 +0.5
637,502 + CA264_02760 0.14 -0.1
637,503 - CA264_02760 0.14 -0.1
637,503 - CA264_02760 0.14 +0.2
637,503 - CA264_02760 0.14 -0.5
637,567 + CA264_02760 0.24 +0.9
637,648 + CA264_02760 0.36 +1.8
637,648 + CA264_02760 0.36 -0.6
637,653 + CA264_02760 0.37 -1.1
637,654 - CA264_02760 0.37 -0.2
637,668 + CA264_02760 0.39 -0.1
637,671 - CA264_02760 0.39 +2.1
637,730 - CA264_02760 0.48 -1.7
637,740 + CA264_02760 0.50 -0.0
637,740 + CA264_02760 0.50 -0.1
637,740 + CA264_02760 0.50 -1.5
637,740 + CA264_02760 0.50 -0.4
637,740 + CA264_02760 0.50 -0.4
637,740 + CA264_02760 0.50 +0.9
637,741 - CA264_02760 0.50 -1.1
637,741 - CA264_02760 0.50 -0.5
637,741 - CA264_02760 0.50 -0.4
637,741 - CA264_02760 0.50 -0.0
637,741 - CA264_02760 0.50 -0.5
637,746 + CA264_02760 0.50 +0.5
637,831 - CA264_02760 0.63 -2.5
637,938 + CA264_02760 0.79 -1.6
637,938 + CA264_02760 0.79 -0.4
637,939 - CA264_02760 0.79 -0.5
637,939 - CA264_02760 0.79 -0.6
637,997 + CA264_02760 0.88 -1.4
638,012 + -0.1
638,013 - -0.8
638,054 - -0.2
638,054 - -0.3
638,077 - -0.8
638,090 - +0.9
638,232 + -0.1
638,233 - +1.9
638,235 - -0.1
638,236 + -0.1
638,269 - +0.0
638,301 - +0.0
638,302 + +0.7
638,472 + CA264_02765 0.21 +0.8
638,472 + CA264_02765 0.21 -0.6
638,473 - CA264_02765 0.21 -1.1
638,544 + CA264_02765 0.34 +0.3
638,583 - CA264_02765 0.41 -0.0
638,614 - CA264_02765 0.46 +0.4
638,649 - CA264_02765 0.53 -0.4
638,667 + CA264_02765 0.56 -0.4
638,667 + CA264_02765 0.56 -2.1
638,668 - CA264_02765 0.56 +0.3
638,746 + CA264_02765 0.70 +1.0
638,747 - CA264_02765 0.70 -1.3
638,747 - CA264_02765 0.70 -0.4
638,998 + -0.1
639,049 + +0.2

Or see this region's nucleotide sequence