Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02745

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02740 and CA264_02745 are separated by 83 nucleotidesCA264_02745 and CA264_02750 are separated by 410 nucleotides CA264_02740: CA264_02740 - hypothetical protein, at 630,283 to 631,668 _02740 CA264_02745: CA264_02745 - mechanosensitive ion channel protein MscS, at 631,752 to 633,077 _02745 CA264_02750: CA264_02750 - RNA-binding transcriptional accessory protein, at 633,488 to 635,758 _02750 Position (kb) 631 632 633 634Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 630.975 kb on + strand, within CA264_02740at 630.976 kb on - strand, within CA264_02740at 631.002 kb on - strand, within CA264_02740at 631.157 kb on + strand, within CA264_02740at 631.157 kb on + strand, within CA264_02740at 631.158 kb on - strand, within CA264_02740at 631.236 kb on - strand, within CA264_02740at 631.237 kb on + strand, within CA264_02740at 631.237 kb on + strand, within CA264_02740at 631.238 kb on - strand, within CA264_02740at 631.238 kb on - strand, within CA264_02740at 631.291 kb on + strand, within CA264_02740at 631.291 kb on + strand, within CA264_02740at 631.331 kb on + strand, within CA264_02740at 631.332 kb on - strand, within CA264_02740at 631.332 kb on - strand, within CA264_02740at 631.377 kb on + strand, within CA264_02740at 631.378 kb on - strand, within CA264_02740at 631.397 kb on + strand, within CA264_02740at 631.455 kb on + strand, within CA264_02740at 631.455 kb on + strand, within CA264_02740at 631.459 kb on + strand, within CA264_02740at 631.460 kb on - strand, within CA264_02740at 631.541 kb on + strandat 631.542 kb on - strandat 631.545 kb on - strandat 631.606 kb on + strandat 631.628 kb on + strandat 631.677 kb on + strandat 631.678 kb on - strandat 631.682 kb on + strandat 631.726 kb on - strandat 631.726 kb on - strandat 631.754 kb on - strandat 631.907 kb on + strand, within CA264_02745at 631.951 kb on + strand, within CA264_02745at 631.980 kb on - strand, within CA264_02745at 632.053 kb on + strand, within CA264_02745at 632.054 kb on - strand, within CA264_02745at 632.054 kb on - strand, within CA264_02745at 632.075 kb on + strand, within CA264_02745at 632.132 kb on - strand, within CA264_02745at 632.139 kb on + strand, within CA264_02745at 632.139 kb on + strand, within CA264_02745at 632.164 kb on + strand, within CA264_02745at 632.224 kb on - strand, within CA264_02745at 632.224 kb on - strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.317 kb on + strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.320 kb on + strand, within CA264_02745at 632.320 kb on + strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.484 kb on + strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.578 kb on - strand, within CA264_02745at 632.580 kb on - strand, within CA264_02745at 632.580 kb on - strand, within CA264_02745at 632.599 kb on + strand, within CA264_02745at 632.599 kb on + strand, within CA264_02745at 632.601 kb on + strand, within CA264_02745at 632.602 kb on - strand, within CA264_02745at 632.616 kb on + strand, within CA264_02745at 632.616 kb on + strand, within CA264_02745at 632.670 kb on - strand, within CA264_02745at 632.670 kb on - strand, within CA264_02745at 632.670 kb on - strand, within CA264_02745at 632.729 kb on - strand, within CA264_02745at 632.729 kb on - strand, within CA264_02745at 632.781 kb on + strand, within CA264_02745at 632.781 kb on + strand, within CA264_02745at 632.782 kb on - strand, within CA264_02745at 632.860 kb on + strand, within CA264_02745at 632.943 kb on - strand, within CA264_02745at 632.985 kb on + strandat 632.986 kb on - strandat 632.986 kb on - strandat 632.989 kb on + strandat 632.990 kb on - strandat 633.028 kb on + strandat 633.080 kb on + strandat 633.081 kb on - strandat 633.081 kb on - strandat 633.130 kb on + strandat 633.248 kb on - strandat 633.273 kb on - strandat 633.278 kb on + strandat 633.279 kb on - strandat 633.308 kb on - strandat 633.327 kb on + strandat 633.349 kb on + strandat 633.363 kb on - strandat 633.368 kb on + strandat 633.420 kb on + strandat 633.433 kb on + strandat 633.434 kb on - strandat 633.470 kb on - strandat 633.470 kb on - strandat 633.470 kb on - strandat 633.470 kb on - strandat 633.477 kb on + strandat 633.477 kb on + strandat 633.477 kb on + strandat 633.478 kb on - strandat 633.478 kb on - strandat 633.479 kb on + strandat 633.480 kb on - strandat 633.480 kb on - strandat 633.485 kb on + strandat 633.486 kb on - strandat 633.487 kb on + strandat 633.488 kb on - strandat 633.496 kb on + strandat 633.501 kb on + strandat 633.502 kb on - strandat 633.502 kb on - strandat 633.502 kb on - strandat 633.514 kb on - strandat 633.544 kb on + strandat 633.544 kb on + strandat 633.797 kb on - strand, within CA264_02750at 633.809 kb on + strand, within CA264_02750at 633.809 kb on + strand, within CA264_02750at 633.810 kb on - strand, within CA264_02750at 633.985 kb on + strand, within CA264_02750at 634.071 kb on + strand, within CA264_02750

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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630,975 + CA264_02740 0.50 +1.5
630,976 - CA264_02740 0.50 +0.0
631,002 - CA264_02740 0.52 -0.2
631,157 + CA264_02740 0.63 +0.6
631,157 + CA264_02740 0.63 -0.1
631,158 - CA264_02740 0.63 +0.9
631,236 - CA264_02740 0.69 +1.4
631,237 + CA264_02740 0.69 -0.5
631,237 + CA264_02740 0.69 -0.1
631,238 - CA264_02740 0.69 -0.0
631,238 - CA264_02740 0.69 -1.0
631,291 + CA264_02740 0.73 -0.9
631,291 + CA264_02740 0.73 -0.1
631,331 + CA264_02740 0.76 +1.4
631,332 - CA264_02740 0.76 -0.4
631,332 - CA264_02740 0.76 -0.6
631,377 + CA264_02740 0.79 -1.0
631,378 - CA264_02740 0.79 +0.1
631,397 + CA264_02740 0.80 -1.2
631,455 + CA264_02740 0.85 +0.4
631,455 + CA264_02740 0.85 -0.6
631,459 + CA264_02740 0.85 -0.6
631,460 - CA264_02740 0.85 -0.9
631,541 + +0.2
631,542 - -0.6
631,545 - +1.1
631,606 + -0.1
631,628 + -1.0
631,677 + +0.5
631,678 - -1.5
631,682 + -0.2
631,726 - +1.2
631,726 - -0.1
631,754 - -0.5
631,907 + CA264_02745 0.12 +1.6
631,951 + CA264_02745 0.15 -0.2
631,980 - CA264_02745 0.17 +0.4
632,053 + CA264_02745 0.23 -0.4
632,054 - CA264_02745 0.23 -0.1
632,054 - CA264_02745 0.23 -0.6
632,075 + CA264_02745 0.24 -0.2
632,132 - CA264_02745 0.29 -1.1
632,139 + CA264_02745 0.29 -0.5
632,139 + CA264_02745 0.29 -0.6
632,164 + CA264_02745 0.31 -0.6
632,224 - CA264_02745 0.36 +0.9
632,224 - CA264_02745 0.36 +0.4
632,312 + CA264_02745 0.42 -2.0
632,312 + CA264_02745 0.42 -1.9
632,312 + CA264_02745 0.42 -0.1
632,312 + CA264_02745 0.42 +0.2
632,313 - CA264_02745 0.42 +1.3
632,313 - CA264_02745 0.42 +1.9
632,313 - CA264_02745 0.42 +0.1
632,313 - CA264_02745 0.42 -2.1
632,317 + CA264_02745 0.43 -0.1
632,318 - CA264_02745 0.43 -0.7
632,318 - CA264_02745 0.43 -0.1
632,318 - CA264_02745 0.43 -3.5
632,320 + CA264_02745 0.43 +0.3
632,320 + CA264_02745 0.43 +0.1
632,321 - CA264_02745 0.43 -0.7
632,321 - CA264_02745 0.43 +0.4
632,321 - CA264_02745 0.43 -0.4
632,484 + CA264_02745 0.55 +0.6
632,485 - CA264_02745 0.55 -0.9
632,485 - CA264_02745 0.55 +0.1
632,485 - CA264_02745 0.55 -0.4
632,578 - CA264_02745 0.62 -0.4
632,580 - CA264_02745 0.62 -1.7
632,580 - CA264_02745 0.62 +1.8
632,599 + CA264_02745 0.64 -0.7
632,599 + CA264_02745 0.64 +0.5
632,601 + CA264_02745 0.64 -0.6
632,602 - CA264_02745 0.64 -1.0
632,616 + CA264_02745 0.65 +0.3
632,616 + CA264_02745 0.65 -1.2
632,670 - CA264_02745 0.69 -1.0
632,670 - CA264_02745 0.69 -0.6
632,670 - CA264_02745 0.69 -2.4
632,729 - CA264_02745 0.74 +1.0
632,729 - CA264_02745 0.74 -1.6
632,781 + CA264_02745 0.78 -1.0
632,781 + CA264_02745 0.78 -0.1
632,782 - CA264_02745 0.78 +0.0
632,860 + CA264_02745 0.84 -0.5
632,943 - CA264_02745 0.90 +1.3
632,985 + -0.1
632,986 - -1.2
632,986 - +2.0
632,989 + +0.6
632,990 - +0.0
633,028 + +0.6
633,080 + +1.2
633,081 - -0.7
633,081 - +0.9
633,130 + +0.8
633,248 - -0.8
633,273 - +0.7
633,278 + +0.2
633,279 - +1.3
633,308 - +1.2
633,327 + -0.1
633,349 + +0.6
633,363 - +0.9
633,368 + +0.4
633,420 + +0.5
633,433 + -0.6
633,434 - +0.7
633,470 - +0.8
633,470 - +2.9
633,470 - +0.3
633,470 - -1.1
633,477 + -0.9
633,477 + +0.5
633,477 + +0.1
633,478 - -0.2
633,478 - +0.1
633,479 + +0.3
633,480 - -0.0
633,480 - -0.1
633,485 + -0.8
633,486 - +0.5
633,487 + -0.1
633,488 - -0.1
633,496 + +1.1
633,501 + +0.3
633,502 - +0.0
633,502 - +0.1
633,502 - -0.5
633,514 - -0.1
633,544 + -0.6
633,544 + -0.5
633,797 - CA264_02750 0.14 +0.9
633,809 + CA264_02750 0.14 -0.3
633,809 + CA264_02750 0.14 -0.7
633,810 - CA264_02750 0.14 -2.2
633,985 + CA264_02750 0.22 -0.9
634,071 + CA264_02750 0.26 -0.5

Or see this region's nucleotide sequence