Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01490

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01480 and CA264_01485 are separated by 90 nucleotidesCA264_01485 and CA264_01490 are separated by 29 nucleotidesCA264_01490 and CA264_01495 are separated by 3 nucleotidesCA264_01495 and CA264_01500 overlap by 1 nucleotides CA264_01480: CA264_01480 - dihydroorotase, at 351,644 to 352,909 _01480 CA264_01485: CA264_01485 - hypothetical protein, at 353,000 to 353,479 _01485 CA264_01490: CA264_01490 - DUF4199 domain-containing protein, at 353,509 to 354,027 _01490 CA264_01495: CA264_01495 - glycosyltransferase, at 354,031 to 355,005 _01495 CA264_01500: CA264_01500 - glycosyl transferase family 1, at 355,005 to 356,153 _01500 Position (kb) 353 354 355Strain fitness (log2 ratio) -1 0 1at 352.511 kb on - strand, within CA264_01480at 352.821 kb on - strandat 352.910 kb on + strandat 352.913 kb on - strandat 352.913 kb on - strandat 352.916 kb on + strandat 352.916 kb on + strandat 352.918 kb on + strandat 352.918 kb on + strandat 352.919 kb on - strandat 352.969 kb on + strandat 352.969 kb on + strandat 352.970 kb on - strandat 353.002 kb on - strandat 353.041 kb on - strandat 353.067 kb on - strand, within CA264_01485at 353.100 kb on - strand, within CA264_01485at 353.141 kb on + strand, within CA264_01485at 353.143 kb on + strand, within CA264_01485at 353.150 kb on + strand, within CA264_01485at 353.250 kb on + strand, within CA264_01485at 353.273 kb on - strand, within CA264_01485at 353.331 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.396 kb on - strand, within CA264_01485at 353.464 kb on - strandat 353.477 kb on + strandat 353.477 kb on + strandat 353.540 kb on + strandat 353.541 kb on - strandat 353.547 kb on - strandat 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.593 kb on - strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.701 kb on + strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.707 kb on + strand, within CA264_01490at 353.708 kb on - strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.815 kb on + strand, within CA264_01490at 353.963 kb on + strand, within CA264_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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352,511 - CA264_01480 0.68 -0.6
352,821 - -1.4
352,910 + -0.3
352,913 - -0.6
352,913 - -0.2
352,916 + -1.2
352,916 + -0.4
352,918 + -0.9
352,918 + -0.7
352,919 - -0.7
352,969 + +0.6
352,969 + -0.0
352,970 - -0.9
353,002 - -0.1
353,041 - +0.6
353,067 - CA264_01485 0.14 +0.4
353,100 - CA264_01485 0.21 +0.3
353,141 + CA264_01485 0.29 -0.1
353,143 + CA264_01485 0.30 -0.8
353,150 + CA264_01485 0.31 -0.3
353,250 + CA264_01485 0.52 +1.1
353,273 - CA264_01485 0.57 +0.9
353,331 + CA264_01485 0.69 +1.1
353,395 + CA264_01485 0.82 -1.2
353,395 + CA264_01485 0.82 +0.7
353,396 - CA264_01485 0.82 -0.1
353,464 - -0.8
353,477 + -1.1
353,477 + -1.1
353,540 + +0.0
353,541 - +0.2
353,547 - +0.0
353,592 + CA264_01490 0.16 +0.3
353,592 + CA264_01490 0.16 -0.8
353,592 + CA264_01490 0.16 +0.1
353,592 + CA264_01490 0.16 +0.2
353,593 - CA264_01490 0.16 +1.2
353,594 + CA264_01490 0.16 +0.5
353,594 + CA264_01490 0.16 +0.0
353,594 + CA264_01490 0.16 +1.0
353,701 + CA264_01490 0.37 +0.9
353,702 - CA264_01490 0.37 -0.0
353,702 - CA264_01490 0.37 +1.3
353,702 - CA264_01490 0.37 +0.3
353,707 + CA264_01490 0.38 +0.0
353,708 - CA264_01490 0.38 +0.3
353,709 + CA264_01490 0.39 -0.7
353,709 + CA264_01490 0.39 +0.5
353,709 + CA264_01490 0.39 -0.3
353,709 + CA264_01490 0.39 +0.2
353,709 + CA264_01490 0.39 +0.6
353,710 - CA264_01490 0.39 +0.2
353,710 - CA264_01490 0.39 +0.5
353,782 - CA264_01490 0.53 +0.3
353,782 - CA264_01490 0.53 -0.8
353,815 + CA264_01490 0.59 +0.4
353,963 + CA264_01490 0.87 +0.1

Or see this region's nucleotide sequence