Strain Fitness in Agrobacterium fabrum C58 around Atu3762

Experiment: 4-Aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3760 and Atu3761 are separated by 138 nucleotidesAtu3761 and Atu3762 overlap by 1 nucleotidesAtu3762 and Atu3763 are separated by 80 nucleotides Atu3760: Atu3760 - hypothetical protein, at 839,775 to 840,563 Atu3760 Atu3761: Atu3761 - hypothetical protein, at 840,702 to 841,241 Atu3761 Atu3762: Atu3762 - pyruvate kinase, at 841,241 to 842,680 Atu3762 Atu3763: Atu3763 - hypothetical protein, at 842,761 to 844,524 Atu3763 Position (kb) 841 842 843Strain fitness (log2 ratio) -1 0 1at 840.348 kb on - strand, within Atu3760at 840.380 kb on + strand, within Atu3760at 840.497 kb on - strandat 840.582 kb on + strandat 840.582 kb on + strandat 840.582 kb on + strandat 840.590 kb on - strandat 840.590 kb on - strandat 840.610 kb on + strandat 840.610 kb on + strandat 841.765 kb on - strand, within Atu3762at 842.914 kb on - strandat 843.045 kb on + strand, within Atu3763at 843.082 kb on + strand, within Atu3763at 843.248 kb on + strand, within Atu3763

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (N)
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840,348 - Atu3760 0.73 -1.1
840,380 + Atu3760 0.77 -0.0
840,497 - -0.2
840,582 + -0.2
840,582 + -1.0
840,582 + +0.3
840,590 - -0.6
840,590 - +0.5
840,610 + -0.1
840,610 + +1.0
841,765 - Atu3762 0.36 +0.0
842,914 - -0.9
843,045 + Atu3763 0.16 -1.1
843,082 + Atu3763 0.18 +1.3
843,248 + Atu3763 0.28 -0.3

Or see this region's nucleotide sequence