Strain Fitness in Pseudomonas simiae WCS417 around PS417_24440

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24430 and PS417_24435 overlap by 4 nucleotidesPS417_24435 and PS417_24440 are separated by 133 nucleotidesPS417_24440 and PS417_24445 are separated by 78 nucleotides PS417_24430: PS417_24430 - 3-dehydroquinate dehydratase, at 5,303,910 to 5,304,359 _24430 PS417_24435: PS417_24435 - shikimate dehydrogenase, at 5,304,356 to 5,305,204 _24435 PS417_24440: PS417_24440 - TetR family transcriptional regulator, at 5,305,338 to 5,305,979 _24440 PS417_24445: PS417_24445 - 4-hydroxyphenylpyruvate dioxygenase, at 5,306,058 to 5,307,959 _24445 Position (kb) 5305 5306Strain fitness (log2 ratio) -3 -2 -1 0 1at 5304.340 kb on + strandat 5304.341 kb on - strandat 5304.558 kb on + strand, within PS417_24435at 5304.559 kb on + strand, within PS417_24435at 5304.563 kb on + strand, within PS417_24435at 5304.817 kb on + strand, within PS417_24435at 5304.818 kb on - strand, within PS417_24435at 5305.034 kb on + strand, within PS417_24435at 5305.198 kb on + strandat 5305.198 kb on + strandat 5305.335 kb on + strandat 5305.394 kb on + strandat 5305.440 kb on - strand, within PS417_24440at 5305.610 kb on - strand, within PS417_24440at 5305.813 kb on + strand, within PS417_24440at 5305.813 kb on + strand, within PS417_24440at 5305.816 kb on + strand, within PS417_24440at 5305.816 kb on + strand, within PS417_24440at 5305.817 kb on - strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.820 kb on - strand, within PS417_24440at 5305.820 kb on - strand, within PS417_24440at 5305.918 kb on - strandat 5306.000 kb on + strandat 5306.060 kb on - strandat 5306.061 kb on + strandat 5306.062 kb on - strandat 5306.137 kb on + strandat 5306.146 kb on + strandat 5306.203 kb on + strandat 5306.203 kb on + strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.242 kb on + strandat 5306.243 kb on - strandat 5306.254 kb on + strand, within PS417_24445at 5306.254 kb on + strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.257 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.315 kb on - strand, within PS417_24445at 5306.315 kb on - strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.587 kb on + strand, within PS417_24445at 5306.701 kb on + strand, within PS417_24445at 5306.702 kb on - strand, within PS417_24445at 5306.702 kb on - strand, within PS417_24445at 5306.731 kb on + strand, within PS417_24445at 5306.732 kb on - strand, within PS417_24445at 5306.815 kb on + strand, within PS417_24445at 5306.816 kb on - strand, within PS417_24445at 5306.917 kb on + strand, within PS417_24445

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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5,304,340 + +0.0
5,304,341 - +0.3
5,304,558 + PS417_24435 0.24 -0.1
5,304,559 + PS417_24435 0.24 +0.0
5,304,563 + PS417_24435 0.24 -0.6
5,304,817 + PS417_24435 0.54 +1.1
5,304,818 - PS417_24435 0.54 -0.1
5,305,034 + PS417_24435 0.80 +0.0
5,305,198 + +0.4
5,305,198 + +0.3
5,305,335 + +0.3
5,305,394 + +0.2
5,305,440 - PS417_24440 0.16 -0.5
5,305,610 - PS417_24440 0.42 -1.7
5,305,813 + PS417_24440 0.74 -0.8
5,305,813 + PS417_24440 0.74 -0.5
5,305,816 + PS417_24440 0.74 -0.2
5,305,816 + PS417_24440 0.74 -0.7
5,305,817 - PS417_24440 0.75 +0.3
5,305,819 + PS417_24440 0.75 +0.3
5,305,819 + PS417_24440 0.75 -0.5
5,305,819 + PS417_24440 0.75 +0.2
5,305,819 + PS417_24440 0.75 -0.7
5,305,819 + PS417_24440 0.75 -1.9
5,305,819 + PS417_24440 0.75 -1.7
5,305,819 + PS417_24440 0.75 -0.6
5,305,819 + PS417_24440 0.75 -1.1
5,305,819 + PS417_24440 0.75 -0.3
5,305,819 + PS417_24440 0.75 -0.9
5,305,819 + PS417_24440 0.75 -0.6
5,305,819 + PS417_24440 0.75 -0.6
5,305,820 - PS417_24440 0.75 +0.5
5,305,820 - PS417_24440 0.75 -1.0
5,305,918 - +0.4
5,306,000 + -0.9
5,306,060 - +0.2
5,306,061 + -0.3
5,306,062 - -0.9
5,306,137 + -0.1
5,306,146 + +1.4
5,306,203 + -1.5
5,306,203 + -0.0
5,306,204 - +0.1
5,306,204 - -0.3
5,306,204 - +0.0
5,306,204 - +0.3
5,306,204 - -0.5
5,306,242 + -0.1
5,306,243 - +0.3
5,306,254 + PS417_24445 0.10 +0.0
5,306,254 + PS417_24445 0.10 +0.5
5,306,255 - PS417_24445 0.10 -0.1
5,306,255 - PS417_24445 0.10 +0.3
5,306,255 - PS417_24445 0.10 +0.2
5,306,257 + PS417_24445 0.10 +0.2
5,306,314 + PS417_24445 0.13 +1.1
5,306,314 + PS417_24445 0.13 -0.2
5,306,314 + PS417_24445 0.13 -0.0
5,306,314 + PS417_24445 0.13 -0.4
5,306,315 - PS417_24445 0.14 +0.1
5,306,315 - PS417_24445 0.14 +0.3
5,306,317 + PS417_24445 0.14 -0.3
5,306,317 + PS417_24445 0.14 +0.3
5,306,317 + PS417_24445 0.14 -0.4
5,306,317 + PS417_24445 0.14 -0.0
5,306,318 - PS417_24445 0.14 -0.4
5,306,318 - PS417_24445 0.14 -0.2
5,306,318 - PS417_24445 0.14 -0.4
5,306,318 - PS417_24445 0.14 -0.1
5,306,318 - PS417_24445 0.14 +0.4
5,306,318 - PS417_24445 0.14 -3.1
5,306,318 - PS417_24445 0.14 -0.6
5,306,587 + PS417_24445 0.28 +0.3
5,306,701 + PS417_24445 0.34 +1.3
5,306,702 - PS417_24445 0.34 -0.2
5,306,702 - PS417_24445 0.34 -0.0
5,306,731 + PS417_24445 0.35 -0.3
5,306,732 - PS417_24445 0.35 -1.1
5,306,815 + PS417_24445 0.40 -0.2
5,306,816 - PS417_24445 0.40 -0.1
5,306,917 + PS417_24445 0.45 -1.3

Or see this region's nucleotide sequence