Strain Fitness in Pseudomonas simiae WCS417 around PS417_02255

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02245 and PS417_02250 overlap by 1 nucleotidesPS417_02250 and PS417_02255 overlap by 4 nucleotidesPS417_02255 and PS417_02260 overlap by 1 nucleotides PS417_02245: PS417_02245 - heptose kinase, at 511,568 to 512,374 _02245 PS417_02250: PS417_02250 - heptose kinase, at 512,374 to 513,108 _02250 PS417_02255: PS417_02255 - lipopolysaccharide kinase, at 513,105 to 513,857 _02255 PS417_02260: PS417_02260 - serine/threonine protein kinase, at 513,857 to 515,296 _02260 Position (kb) 513 514Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 513.291 kb on + strand, within PS417_02255at 513.291 kb on + strand, within PS417_02255at 513.633 kb on + strand, within PS417_02255

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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513,291 + PS417_02255 0.25 +0.4
513,291 + PS417_02255 0.25 -2.7
513,633 + PS417_02255 0.70 -4.8

Or see this region's nucleotide sequence