Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20190 and PS417_20195 are separated by 34 nucleotides PS417_20195 and PS417_20205 are separated by 543 nucleotides
PS417_20190: PS417_20190 - nitrate reductase, at 4,386,189 to 4,387,700
_20190
PS417_20195: PS417_20195 - sodium:solute symporter, at 4,387,735 to 4,389,117
_20195
PS417_20205: PS417_20205 - LysR family transcriptional regulator, at 4,389,661 to 4,390,554
_20205
Position (kb) 4387
4388
4389
4390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.904 kb on - strand, within PS417_20190 at 4386.928 kb on + strand, within PS417_20190 at 4387.029 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.136 kb on + strand, within PS417_20190 at 4387.137 kb on - strand, within PS417_20190 at 4387.147 kb on - strand, within PS417_20190 at 4387.365 kb on + strand, within PS417_20190 at 4387.365 kb on + strand, within PS417_20190 at 4387.366 kb on - strand, within PS417_20190 at 4387.366 kb on - strand, within PS417_20190 at 4387.549 kb on + strand at 4387.549 kb on + strand at 4387.550 kb on - strand at 4387.550 kb on - strand at 4387.550 kb on - strand at 4387.550 kb on - strand at 4387.587 kb on + strand at 4387.587 kb on + strand at 4387.587 kb on + strand at 4387.587 kb on + strand at 4387.748 kb on + strand at 4387.758 kb on - strand at 4387.793 kb on - strand at 4387.828 kb on + strand at 4387.829 kb on - strand at 4387.829 kb on - strand at 4387.829 kb on - strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.864 kb on + strand at 4387.865 kb on - strand at 4387.865 kb on - strand at 4387.865 kb on - strand at 4387.865 kb on - strand at 4387.890 kb on - strand, within PS417_20195 at 4387.930 kb on + strand, within PS417_20195 at 4387.930 kb on + strand, within PS417_20195 at 4387.930 kb on + strand, within PS417_20195 at 4387.930 kb on + strand, within PS417_20195 at 4387.931 kb on - strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.934 kb on + strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4387.935 kb on - strand, within PS417_20195 at 4388.063 kb on - strand, within PS417_20195 at 4388.221 kb on + strand, within PS417_20195 at 4388.222 kb on - strand at 4388.414 kb on - strand, within PS417_20195 at 4388.414 kb on - strand, within PS417_20195 at 4388.425 kb on + strand, within PS417_20195 at 4388.425 kb on + strand, within PS417_20195 at 4388.425 kb on + strand, within PS417_20195 at 4388.425 kb on + strand, within PS417_20195 at 4388.426 kb on - strand, within PS417_20195 at 4388.426 kb on - strand, within PS417_20195 at 4388.426 kb on - strand, within PS417_20195 at 4388.426 kb on - strand, within PS417_20195 at 4388.426 kb on - strand, within PS417_20195 at 4388.500 kb on + strand at 4388.524 kb on + strand, within PS417_20195 at 4388.524 kb on + strand, within PS417_20195 at 4388.524 kb on + strand, within PS417_20195 at 4388.525 kb on - strand, within PS417_20195 at 4388.525 kb on - strand, within PS417_20195 at 4388.525 kb on - strand, within PS417_20195 at 4388.726 kb on + strand, within PS417_20195 at 4388.873 kb on - strand, within PS417_20195 at 4389.028 kb on + strand at 4389.028 kb on + strand at 4389.029 kb on - strand at 4389.029 kb on - strand at 4389.289 kb on + strand at 4389.290 kb on - strand at 4389.328 kb on - strand at 4389.398 kb on - strand at 4389.538 kb on - strand at 4389.538 kb on - strand at 4389.547 kb on - strand at 4389.580 kb on + strand at 4389.580 kb on + strand at 4389.580 kb on + strand at 4389.581 kb on - strand at 4389.581 kb on - strand at 4389.583 kb on + strand at 4389.584 kb on - strand at 4389.590 kb on - strand at 4389.600 kb on + strand at 4389.600 kb on + strand at 4389.600 kb on + strand at 4389.600 kb on + strand at 4389.601 kb on - strand at 4389.601 kb on - strand at 4389.627 kb on + strand at 4389.628 kb on - strand at 4389.747 kb on + strand at 4389.902 kb on + strand, within PS417_20205
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,386,903 + PS417_20190 0.47 -0.2 4,386,903 + PS417_20190 0.47 -0.5 4,386,903 + PS417_20190 0.47 -0.7 4,386,904 - PS417_20190 0.47 +0.0 4,386,928 + PS417_20190 0.49 -0.0 4,387,029 + PS417_20190 0.56 +0.4 4,387,047 + PS417_20190 0.57 -0.1 4,387,047 + PS417_20190 0.57 -0.0 4,387,047 + PS417_20190 0.57 -0.4 4,387,047 + PS417_20190 0.57 +1.1 4,387,047 + PS417_20190 0.57 +0.0 4,387,048 - PS417_20190 0.57 +1.5 4,387,048 - PS417_20190 0.57 -0.2 4,387,048 - PS417_20190 0.57 -0.7 4,387,048 - PS417_20190 0.57 -0.1 4,387,136 + PS417_20190 0.63 -0.1 4,387,137 - PS417_20190 0.63 +0.4 4,387,147 - PS417_20190 0.63 +0.3 4,387,365 + PS417_20190 0.78 +1.0 4,387,365 + PS417_20190 0.78 +0.5 4,387,366 - PS417_20190 0.78 -0.4 4,387,366 - PS417_20190 0.78 -0.3 4,387,549 + -0.4 4,387,549 + +0.0 4,387,550 - +0.0 4,387,550 - +0.8 4,387,550 - +0.1 4,387,550 - +0.4 4,387,587 + +0.3 4,387,587 + +0.1 4,387,587 + +0.5 4,387,587 + +0.5 4,387,748 + -0.6 4,387,758 - -0.5 4,387,793 - +0.3 4,387,828 + +1.0 4,387,829 - -0.2 4,387,829 - +0.3 4,387,829 - +0.4 4,387,864 + -0.6 4,387,864 + +0.8 4,387,864 + -0.0 4,387,864 + +0.4 4,387,864 + +0.1 4,387,864 + +2.5 4,387,864 + +0.2 4,387,865 - +0.3 4,387,865 - -0.6 4,387,865 - +0.2 4,387,865 - -1.4 4,387,890 - PS417_20195 0.11 -0.5 4,387,930 + PS417_20195 0.14 -0.0 4,387,930 + PS417_20195 0.14 +0.0 4,387,930 + PS417_20195 0.14 +0.5 4,387,930 + PS417_20195 0.14 +0.1 4,387,931 - PS417_20195 0.14 -0.0 4,387,934 + PS417_20195 0.14 +0.2 4,387,934 + PS417_20195 0.14 -0.5 4,387,934 + PS417_20195 0.14 -0.3 4,387,934 + PS417_20195 0.14 +0.5 4,387,934 + PS417_20195 0.14 -0.1 4,387,934 + PS417_20195 0.14 -2.7 4,387,934 + PS417_20195 0.14 -0.6 4,387,934 + PS417_20195 0.14 +0.1 4,387,934 + PS417_20195 0.14 -1.2 4,387,934 + PS417_20195 0.14 -2.0 4,387,934 + PS417_20195 0.14 +0.3 4,387,934 + PS417_20195 0.14 +0.1 4,387,935 - PS417_20195 0.14 -0.7 4,387,935 - PS417_20195 0.14 -0.7 4,387,935 - PS417_20195 0.14 -0.2 4,387,935 - PS417_20195 0.14 -0.7 4,387,935 - PS417_20195 0.14 -0.3 4,387,935 - PS417_20195 0.14 +0.0 4,387,935 - PS417_20195 0.14 +0.4 4,387,935 - PS417_20195 0.14 -0.2 4,388,063 - PS417_20195 0.24 -0.4 4,388,221 + PS417_20195 0.35 +0.0 4,388,222 - -0.7 4,388,414 - PS417_20195 0.49 -0.4 4,388,414 - PS417_20195 0.49 -1.6 4,388,425 + PS417_20195 0.50 -1.3 4,388,425 + PS417_20195 0.50 -0.2 4,388,425 + PS417_20195 0.50 +0.2 4,388,425 + PS417_20195 0.50 +0.8 4,388,426 - PS417_20195 0.50 -0.6 4,388,426 - PS417_20195 0.50 -0.5 4,388,426 - PS417_20195 0.50 +1.3 4,388,426 - PS417_20195 0.50 -0.1 4,388,426 - PS417_20195 0.50 +0.2 4,388,500 + -1.0 4,388,524 + PS417_20195 0.57 -0.1 4,388,524 + PS417_20195 0.57 -1.0 4,388,524 + PS417_20195 0.57 +0.3 4,388,525 - PS417_20195 0.57 -0.2 4,388,525 - PS417_20195 0.57 +0.1 4,388,525 - PS417_20195 0.57 +0.4 4,388,726 + PS417_20195 0.72 +0.0 4,388,873 - PS417_20195 0.82 -0.5 4,389,028 + +0.1 4,389,028 + -1.1 4,389,029 - -0.5 4,389,029 - +0.2 4,389,289 + +0.2 4,389,290 - -1.2 4,389,328 - -0.1 4,389,398 - +0.8 4,389,538 - +0.5 4,389,538 - -0.1 4,389,547 - -0.1 4,389,580 + +0.5 4,389,580 + -0.3 4,389,580 + -0.0 4,389,581 - +0.3 4,389,581 - -0.2 4,389,583 + -0.6 4,389,584 - -0.7 4,389,590 - -0.1 4,389,600 + +0.1 4,389,600 + -0.4 4,389,600 + -0.6 4,389,600 + +0.8 4,389,601 - +1.3 4,389,601 - +0.1 4,389,627 + -0.3 4,389,628 - -1.2 4,389,747 + +0.0 4,389,902 + PS417_20205 0.27 +0.0
Or see this region's nucleotide sequence