Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18650 and PS417_18655 are separated by 78 nucleotides PS417_18655 and PS417_18660 are separated by 0 nucleotides PS417_18660 and PS417_18665 are separated by 78 nucleotides PS417_18665 and PS417_18670 are separated by 50 nucleotides PS417_18670 and PS417_18675 are separated by 78 nucleotides PS417_18675 and PS417_18680 are separated by 147 nucleotides PS417_18680 and PS417_18685 are separated by 206 nucleotides
PS417_18650: PS417_18650 - tRNA-Glu, at 4,053,214 to 4,053,289
_18650
PS417_18655: PS417_18655 - tRNA-Ala, at 4,053,368 to 4,053,443
_18655
PS417_18660: PS417_18660 - tRNA-Glu, at 4,053,444 to 4,053,519
_18660
PS417_18665: PS417_18665 - tRNA-Ala, at 4,053,598 to 4,053,673
_18665
PS417_18670: PS417_18670 - tRNA-Glu, at 4,053,724 to 4,053,799
_18670
PS417_18675: PS417_18675 - tRNA-Ala, at 4,053,878 to 4,053,953
_18675
PS417_18680: PS417_18680 - glutamyl-tRNA synthetase, at 4,054,101 to 4,055,582
_18680
PS417_18685: PS417_18685 - excinuclease ABC subunit B, at 4,055,789 to 4,057,804
_18685
Position (kb)
4054
4055
4056 Strain fitness (log2 ratio)
-1
0
1 at 4053.303 kb on - strand at 4053.303 kb on - strand at 4053.303 kb on - strand at 4055.732 kb on + strand at 4055.732 kb on + strand at 4055.733 kb on - strand at 4055.877 kb on + strand at 4055.877 kb on + strand at 4055.878 kb on - strand at 4055.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,053,303 - -0.8 4,053,303 - -0.9 4,053,303 - -1.0 4,055,732 + +0.0 4,055,732 + -0.5 4,055,733 - -0.8 4,055,877 + +0.3 4,055,877 + -0.7 4,055,878 - -0.1 4,055,878 - +0.8
Or see this region's nucleotide sequence