Strain Fitness in Pseudomonas simiae WCS417 around PS417_08980

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08975 and PS417_08980 are separated by 11 nucleotidesPS417_08980 and PS417_08985 are separated by 249 nucleotides PS417_08975: PS417_08975 - 3-oxoacyl-ACP synthase, at 1,953,941 to 1,955,161 _08975 PS417_08980: PS417_08980 - 3-hydroxydecanoyl-ACP dehydratase, at 1,955,173 to 1,955,688 _08980 PS417_08985: PS417_08985 - histidine kinase, at 1,955,938 to 1,957,839 _08985 Position (kb) 1955 1956Strain fitness (log2 ratio) -2 -1 0 1at 1955.726 kb on - strandat 1955.774 kb on - strandat 1955.774 kb on - strandat 1955.780 kb on - strandat 1955.780 kb on - strandat 1955.780 kb on - strandat 1955.785 kb on - strandat 1955.785 kb on - strandat 1955.818 kb on - strandat 1955.999 kb on + strandat 1956.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,955,726 - +0.8
1,955,774 - +0.3
1,955,774 - -1.0
1,955,780 - -0.1
1,955,780 - -1.5
1,955,780 - -2.0
1,955,785 - +0.1
1,955,785 - +0.3
1,955,818 - +1.1
1,955,999 + +1.4
1,956,000 - -0.0

Or see this region's nucleotide sequence