Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0440 and Echvi_0441 are separated by 785 nucleotides Echvi_0441 and Echvi_0442 are separated by 6 nucleotides
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Echvi_0441: Echvi_0441 - Predicted ATP-dependent endonuclease of the OLD family, at 479,953 to 481,680
_0441
Echvi_0442: Echvi_0442 - Superfamily I DNA and RNA helicases, at 481,687 to 483,507
_0442
Position (kb) 479
480
481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.447 kb on - strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.509 kb on + strand at 479.509 kb on + strand at 479.515 kb on + strand at 479.515 kb on + strand at 479.575 kb on + strand at 479.576 kb on - strand at 479.587 kb on + strand at 479.588 kb on - strand at 479.599 kb on - strand at 479.622 kb on + strand at 479.624 kb on + strand at 479.625 kb on - strand at 479.647 kb on - strand at 479.655 kb on + strand at 479.691 kb on + strand at 479.703 kb on + strand at 479.719 kb on + strand at 479.735 kb on - strand at 479.735 kb on - strand at 479.736 kb on + strand at 479.736 kb on + strand at 479.737 kb on - strand at 479.742 kb on + strand at 479.743 kb on - strand at 479.816 kb on + strand at 479.817 kb on - strand at 479.936 kb on + strand at 479.936 kb on + strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.939 kb on - strand at 479.939 kb on - strand at 479.939 kb on - strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.027 kb on - strand at 480.030 kb on - strand at 480.035 kb on + strand at 480.035 kb on + strand at 480.042 kb on + strand at 480.045 kb on + strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.049 kb on - strand at 480.065 kb on + strand at 480.065 kb on + strand at 480.089 kb on + strand at 480.099 kb on + strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.140 kb on - strand, within Echvi_0441 at 480.150 kb on - strand, within Echvi_0441 at 480.151 kb on + strand, within Echvi_0441 at 480.156 kb on + strand, within Echvi_0441 at 480.157 kb on - strand, within Echvi_0441 at 480.191 kb on + strand, within Echvi_0441 at 480.192 kb on - strand, within Echvi_0441 at 480.201 kb on - strand, within Echvi_0441 at 480.212 kb on + strand, within Echvi_0441 at 480.238 kb on - strand, within Echvi_0441 at 480.245 kb on - strand, within Echvi_0441 at 480.248 kb on + strand, within Echvi_0441 at 480.248 kb on + strand, within Echvi_0441 at 480.249 kb on - strand, within Echvi_0441 at 480.262 kb on - strand, within Echvi_0441 at 480.318 kb on + strand, within Echvi_0441 at 480.355 kb on + strand, within Echvi_0441 at 480.356 kb on - strand, within Echvi_0441 at 480.420 kb on + strand, within Echvi_0441 at 480.421 kb on - strand, within Echvi_0441 at 480.421 kb on - strand, within Echvi_0441 at 480.428 kb on + strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.483 kb on - strand, within Echvi_0441 at 480.504 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.531 kb on + strand, within Echvi_0441 at 480.592 kb on - strand, within Echvi_0441 at 480.592 kb on - strand, within Echvi_0441 at 480.610 kb on - strand, within Echvi_0441 at 480.627 kb on + strand, within Echvi_0441 at 480.649 kb on - strand, within Echvi_0441 at 480.650 kb on + strand, within Echvi_0441 at 480.651 kb on - strand, within Echvi_0441 at 480.651 kb on - strand, within Echvi_0441 at 480.705 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.756 kb on + strand, within Echvi_0441 at 480.756 kb on + strand, within Echvi_0441 at 480.762 kb on + strand, within Echvi_0441 at 480.794 kb on - strand, within Echvi_0441 at 480.796 kb on - strand, within Echvi_0441 at 480.804 kb on + strand, within Echvi_0441 at 480.805 kb on - strand, within Echvi_0441 at 480.810 kb on + strand, within Echvi_0441 at 480.811 kb on - strand, within Echvi_0441 at 480.811 kb on - strand, within Echvi_0441 at 480.816 kb on + strand, within Echvi_0441 at 480.820 kb on - strand, within Echvi_0441 at 480.849 kb on - strand, within Echvi_0441 at 480.870 kb on - strand, within Echvi_0441 at 480.872 kb on + strand, within Echvi_0441 at 480.873 kb on - strand, within Echvi_0441 at 480.873 kb on - strand, within Echvi_0441 at 480.910 kb on + strand, within Echvi_0441 at 480.913 kb on - strand, within Echvi_0441 at 480.913 kb on - strand, within Echvi_0441 at 480.924 kb on + strand, within Echvi_0441 at 480.924 kb on + strand, within Echvi_0441 at 480.925 kb on - strand, within Echvi_0441 at 480.925 kb on - strand, within Echvi_0441 at 480.962 kb on + strand, within Echvi_0441 at 480.962 kb on + strand, within Echvi_0441 at 480.982 kb on + strand, within Echvi_0441 at 480.982 kb on + strand, within Echvi_0441 at 480.983 kb on - strand, within Echvi_0441 at 480.983 kb on - strand, within Echvi_0441 at 480.987 kb on + strand, within Echvi_0441 at 480.987 kb on + strand, within Echvi_0441 at 481.015 kb on - strand, within Echvi_0441 at 481.036 kb on - strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.042 kb on - strand, within Echvi_0441 at 481.093 kb on + strand, within Echvi_0441 at 481.096 kb on - strand, within Echvi_0441 at 481.146 kb on + strand, within Echvi_0441 at 481.147 kb on - strand, within Echvi_0441 at 481.203 kb on - strand, within Echvi_0441 at 481.203 kb on - strand, within Echvi_0441 at 481.226 kb on - strand, within Echvi_0441 at 481.250 kb on + strand, within Echvi_0441 at 481.250 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.317 kb on + strand, within Echvi_0441 at 481.334 kb on + strand, within Echvi_0441 at 481.335 kb on - strand, within Echvi_0441 at 481.342 kb on - strand, within Echvi_0441 at 481.351 kb on - strand, within Echvi_0441 at 481.382 kb on + strand, within Echvi_0441 at 481.383 kb on - strand, within Echvi_0441 at 481.431 kb on - strand, within Echvi_0441 at 481.438 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.493 kb on + strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.497 kb on - strand, within Echvi_0441 at 481.664 kb on + strand at 481.665 kb on - strand at 481.706 kb on + strand at 481.794 kb on + strand at 481.800 kb on - strand at 481.869 kb on + strand, within Echvi_0442 at 481.869 kb on + strand, within Echvi_0442 at 481.870 kb on - strand, within Echvi_0442 at 481.894 kb on - strand, within Echvi_0442 at 481.911 kb on - strand, within Echvi_0442 at 481.911 kb on - strand, within Echvi_0442 at 481.939 kb on - strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.951 kb on + strand, within Echvi_0442 at 481.961 kb on - strand, within Echvi_0442 at 481.991 kb on - strand, within Echvi_0442 at 481.991 kb on - strand, within Echvi_0442 at 482.025 kb on - strand, within Echvi_0442 at 482.047 kb on - strand, within Echvi_0442 at 482.136 kb on + strand, within Echvi_0442 at 482.139 kb on + strand, within Echvi_0442 at 482.218 kb on - strand, within Echvi_0442 at 482.225 kb on + strand, within Echvi_0442 at 482.238 kb on - strand, within Echvi_0442 at 482.241 kb on + strand, within Echvi_0442 at 482.241 kb on + strand, within Echvi_0442 at 482.259 kb on - strand, within Echvi_0442 at 482.303 kb on + strand, within Echvi_0442 at 482.303 kb on + strand, within Echvi_0442 at 482.306 kb on + strand, within Echvi_0442 at 482.323 kb on - strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.329 kb on - strand, within Echvi_0442 at 482.376 kb on - strand, within Echvi_0442 at 482.397 kb on + strand, within Echvi_0442 at 482.475 kb on + strand, within Echvi_0442 at 482.475 kb on + strand, within Echvi_0442 at 482.522 kb on - strand, within Echvi_0442 at 482.556 kb on + strand, within Echvi_0442 at 482.557 kb on - strand, within Echvi_0442 at 482.581 kb on - strand, within Echvi_0442 at 482.581 kb on - strand, within Echvi_0442 at 482.585 kb on + strand, within Echvi_0442 at 482.585 kb on + strand, within Echvi_0442 at 482.586 kb on - strand, within Echvi_0442 at 482.628 kb on - strand, within Echvi_0442 at 482.655 kb on - strand, within Echvi_0442
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 479,447 - +1.6 479,475 + -0.5 479,475 + -2.8 479,475 + -0.5 479,509 + +1.9 479,509 + +1.1 479,515 + -0.4 479,515 + +0.1 479,575 + -1.2 479,576 - -0.4 479,587 + +0.6 479,588 - +0.4 479,599 - -0.3 479,622 + +0.8 479,624 + +0.8 479,625 - +0.8 479,647 - -0.8 479,655 + -0.3 479,691 + -0.4 479,703 + -1.4 479,719 + +2.0 479,735 - -1.3 479,735 - -1.5 479,736 + +1.3 479,736 + -2.1 479,737 - -2.9 479,742 + +0.6 479,743 - -1.9 479,816 + +1.8 479,817 - -0.4 479,936 + +1.2 479,936 + +0.2 479,937 - +0.2 479,937 - -0.1 479,937 - +0.1 479,938 + -0.1 479,938 + -0.4 479,938 + -0.8 479,938 + -1.2 479,938 + -1.0 479,939 - +0.0 479,939 - +0.1 479,939 - +1.3 480,026 + -1.4 480,026 + -0.2 480,026 + -0.6 480,026 + +1.0 480,026 + +1.7 480,027 - -0.8 480,030 - +1.9 480,035 + -0.5 480,035 + -0.8 480,042 + -0.3 480,045 + -0.1 480,046 - -0.1 480,046 - -0.7 480,046 - -1.2 480,049 - +0.3 480,065 + +1.2 480,065 + -1.1 480,089 + -2.6 480,099 + -0.0 480,100 - -0.1 480,100 - -0.0 480,140 - Echvi_0441 0.11 -0.1 480,150 - Echvi_0441 0.11 +0.5 480,151 + Echvi_0441 0.11 -2.0 480,156 + Echvi_0441 0.12 -0.4 480,157 - Echvi_0441 0.12 +0.6 480,191 + Echvi_0441 0.14 -1.2 480,192 - Echvi_0441 0.14 +1.1 480,201 - Echvi_0441 0.14 +0.2 480,212 + Echvi_0441 0.15 +0.9 480,238 - Echvi_0441 0.16 +0.8 480,245 - Echvi_0441 0.17 +0.5 480,248 + Echvi_0441 0.17 +0.3 480,248 + Echvi_0441 0.17 +0.7 480,249 - Echvi_0441 0.17 -0.9 480,262 - Echvi_0441 0.18 -1.8 480,318 + Echvi_0441 0.21 -0.3 480,355 + Echvi_0441 0.23 -0.4 480,356 - Echvi_0441 0.23 -1.5 480,420 + Echvi_0441 0.27 +0.4 480,421 - Echvi_0441 0.27 +0.1 480,421 - Echvi_0441 0.27 -0.8 480,428 + Echvi_0441 0.27 -0.3 480,474 - Echvi_0441 0.30 -0.8 480,474 - Echvi_0441 0.30 -0.4 480,474 - Echvi_0441 0.30 -2.1 480,483 - Echvi_0441 0.31 +0.3 480,504 - Echvi_0441 0.32 +0.8 480,528 - Echvi_0441 0.33 +0.4 480,528 - Echvi_0441 0.33 +0.5 480,528 - Echvi_0441 0.33 +0.4 480,531 + Echvi_0441 0.33 +0.9 480,592 - Echvi_0441 0.37 +0.0 480,592 - Echvi_0441 0.37 +0.1 480,610 - Echvi_0441 0.38 +0.0 480,627 + Echvi_0441 0.39 +0.3 480,649 - Echvi_0441 0.40 +0.1 480,650 + Echvi_0441 0.40 -0.9 480,651 - Echvi_0441 0.40 +0.3 480,651 - Echvi_0441 0.40 -0.2 480,705 - Echvi_0441 0.44 +1.1 480,748 - Echvi_0441 0.46 -0.5 480,748 - Echvi_0441 0.46 -0.5 480,748 - Echvi_0441 0.46 -0.1 480,756 + Echvi_0441 0.46 +1.6 480,756 + Echvi_0441 0.46 +0.5 480,762 + Echvi_0441 0.47 -1.9 480,794 - Echvi_0441 0.49 -0.2 480,796 - Echvi_0441 0.49 +1.6 480,804 + Echvi_0441 0.49 -0.4 480,805 - Echvi_0441 0.49 +0.2 480,810 + Echvi_0441 0.50 +0.1 480,811 - Echvi_0441 0.50 +0.9 480,811 - Echvi_0441 0.50 -1.3 480,816 + Echvi_0441 0.50 -1.3 480,820 - Echvi_0441 0.50 +1.0 480,849 - Echvi_0441 0.52 -0.2 480,870 - Echvi_0441 0.53 +0.8 480,872 + Echvi_0441 0.53 +1.0 480,873 - Echvi_0441 0.53 +0.3 480,873 - Echvi_0441 0.53 -0.7 480,910 + Echvi_0441 0.55 -0.3 480,913 - Echvi_0441 0.56 -0.2 480,913 - Echvi_0441 0.56 -1.0 480,924 + Echvi_0441 0.56 -0.6 480,924 + Echvi_0441 0.56 +0.2 480,925 - Echvi_0441 0.56 +0.2 480,925 - Echvi_0441 0.56 +0.6 480,962 + Echvi_0441 0.58 -0.3 480,962 + Echvi_0441 0.58 +0.8 480,982 + Echvi_0441 0.60 -0.3 480,982 + Echvi_0441 0.60 -0.2 480,983 - Echvi_0441 0.60 +0.1 480,983 - Echvi_0441 0.60 -0.8 480,987 + Echvi_0441 0.60 +0.1 480,987 + Echvi_0441 0.60 +1.3 481,015 - Echvi_0441 0.61 -0.0 481,036 - Echvi_0441 0.63 -0.9 481,041 + Echvi_0441 0.63 -0.7 481,041 + Echvi_0441 0.63 -1.7 481,041 + Echvi_0441 0.63 -1.0 481,042 - Echvi_0441 0.63 +1.4 481,093 + Echvi_0441 0.66 -1.0 481,096 - Echvi_0441 0.66 -2.3 481,146 + Echvi_0441 0.69 +0.5 481,147 - Echvi_0441 0.69 +0.9 481,203 - Echvi_0441 0.72 -0.4 481,203 - Echvi_0441 0.72 -1.7 481,226 - Echvi_0441 0.74 -1.7 481,250 + Echvi_0441 0.75 +0.4 481,250 + Echvi_0441 0.75 +0.2 481,256 + Echvi_0441 0.75 +0.9 481,256 + Echvi_0441 0.75 -2.5 481,256 + Echvi_0441 0.75 +0.8 481,257 - Echvi_0441 0.75 +1.6 481,257 - Echvi_0441 0.75 -0.8 481,257 - Echvi_0441 0.75 +0.6 481,257 - Echvi_0441 0.75 +0.2 481,317 + Echvi_0441 0.79 +0.5 481,334 + Echvi_0441 0.80 +0.2 481,335 - Echvi_0441 0.80 +0.7 481,342 - Echvi_0441 0.80 -1.4 481,351 - Echvi_0441 0.81 +0.4 481,382 + Echvi_0441 0.83 -0.7 481,383 - Echvi_0441 0.83 -0.5 481,431 - Echvi_0441 0.86 -1.8 481,438 - Echvi_0441 0.86 -1.6 481,492 - Echvi_0441 0.89 +1.8 481,492 - Echvi_0441 0.89 +0.1 481,492 - Echvi_0441 0.89 -0.9 481,492 - Echvi_0441 0.89 -1.0 481,493 + Echvi_0441 0.89 +0.1 481,494 - Echvi_0441 0.89 -0.8 481,494 - Echvi_0441 0.89 +0.5 481,494 - Echvi_0441 0.89 +2.6 481,494 - Echvi_0441 0.89 -0.5 481,497 - Echvi_0441 0.89 +0.4 481,664 + +0.8 481,665 - +1.0 481,706 + -0.3 481,794 + +0.4 481,800 - -0.3 481,869 + Echvi_0442 0.10 -0.2 481,869 + Echvi_0442 0.10 -2.3 481,870 - Echvi_0442 0.10 -0.6 481,894 - Echvi_0442 0.11 +1.0 481,911 - Echvi_0442 0.12 -0.1 481,911 - Echvi_0442 0.12 -1.8 481,939 - Echvi_0442 0.14 -1.1 481,947 + Echvi_0442 0.14 -1.6 481,947 + Echvi_0442 0.14 -0.0 481,947 + Echvi_0442 0.14 -0.3 481,947 + Echvi_0442 0.14 +0.2 481,947 + Echvi_0442 0.14 +0.7 481,951 + Echvi_0442 0.14 -0.9 481,961 - Echvi_0442 0.15 +1.0 481,991 - Echvi_0442 0.17 -0.2 481,991 - Echvi_0442 0.17 +0.2 482,025 - Echvi_0442 0.19 +1.7 482,047 - Echvi_0442 0.20 +0.1 482,136 + Echvi_0442 0.25 -0.5 482,139 + Echvi_0442 0.25 +0.1 482,218 - Echvi_0442 0.29 +0.1 482,225 + Echvi_0442 0.30 +1.2 482,238 - Echvi_0442 0.30 +1.9 482,241 + Echvi_0442 0.30 -2.2 482,241 + Echvi_0442 0.30 -0.5 482,259 - Echvi_0442 0.31 -1.6 482,303 + Echvi_0442 0.34 +1.3 482,303 + Echvi_0442 0.34 +0.8 482,306 + Echvi_0442 0.34 +0.4 482,323 - Echvi_0442 0.35 +0.3 482,328 + Echvi_0442 0.35 -0.5 482,328 + Echvi_0442 0.35 -1.2 482,328 + Echvi_0442 0.35 +0.5 482,328 + Echvi_0442 0.35 -0.4 482,329 - Echvi_0442 0.35 -1.2 482,376 - Echvi_0442 0.38 +0.8 482,397 + Echvi_0442 0.39 -0.3 482,475 + Echvi_0442 0.43 +0.8 482,475 + Echvi_0442 0.43 +2.0 482,522 - Echvi_0442 0.46 +1.0 482,556 + Echvi_0442 0.48 -0.1 482,557 - Echvi_0442 0.48 -1.6 482,581 - Echvi_0442 0.49 -0.7 482,581 - Echvi_0442 0.49 -1.2 482,585 + Echvi_0442 0.49 +1.2 482,585 + Echvi_0442 0.49 -2.4 482,586 - Echvi_0442 0.49 -0.6 482,628 - Echvi_0442 0.52 -0.1 482,655 - Echvi_0442 0.53 +0.7
Or see this region's nucleotide sequence