Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20685

Experiment: m.b. Carbenicillin 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20675 and CA264_20680 are separated by 62 nucleotidesCA264_20680 and CA264_20685 are separated by 138 nucleotidesCA264_20685 and CA264_20690 are separated by 218 nucleotides CA264_20675: CA264_20675 - trehalase, at 4,759,738 to 4,761,375 _20675 CA264_20680: CA264_20680 - hypothetical protein, at 4,761,438 to 4,761,833 _20680 CA264_20685: CA264_20685 - transposase, at 4,761,972 to 4,762,514 _20685 CA264_20690: CA264_20690 - methylmalonyl-CoA mutase, at 4,762,733 to 4,764,877 _20690 Position (kb) 4761 4762 4763Strain fitness (log2 ratio) -1 0 1 2 3at 4761.004 kb on - strand, within CA264_20675at 4761.007 kb on + strand, within CA264_20675at 4761.025 kb on + strand, within CA264_20675at 4761.025 kb on + strand, within CA264_20675at 4761.026 kb on - strand, within CA264_20675at 4761.061 kb on - strand, within CA264_20675at 4761.086 kb on - strand, within CA264_20675at 4761.126 kb on + strand, within CA264_20675at 4761.126 kb on + strand, within CA264_20675at 4761.126 kb on + strand, within CA264_20675at 4761.126 kb on + strand, within CA264_20675at 4761.127 kb on - strand, within CA264_20675at 4761.127 kb on - strand, within CA264_20675at 4761.232 kb on + strandat 4761.272 kb on + strandat 4761.273 kb on - strandat 4761.357 kb on - strandat 4761.376 kb on - strandat 4761.434 kb on + strandat 4761.435 kb on - strandat 4761.435 kb on - strandat 4761.435 kb on - strandat 4761.437 kb on - strandat 4761.439 kb on + strandat 4761.440 kb on - strandat 4761.440 kb on - strandat 4761.440 kb on - strandat 4761.503 kb on + strand, within CA264_20680at 4761.505 kb on + strand, within CA264_20680at 4761.505 kb on + strand, within CA264_20680at 4761.584 kb on - strand, within CA264_20680at 4761.584 kb on - strand, within CA264_20680at 4761.601 kb on + strand, within CA264_20680at 4761.620 kb on + strand, within CA264_20680at 4761.648 kb on + strand, within CA264_20680at 4761.673 kb on + strand, within CA264_20680at 4761.674 kb on - strand, within CA264_20680at 4761.728 kb on + strand, within CA264_20680at 4761.751 kb on - strand, within CA264_20680at 4761.799 kb on - strandat 4761.826 kb on - strandat 4761.826 kb on - strandat 4761.826 kb on - strandat 4761.844 kb on - strandat 4761.844 kb on - strandat 4761.851 kb on + strandat 4761.859 kb on + strandat 4761.921 kb on + strandat 4761.922 kb on - strandat 4761.922 kb on - strandat 4761.922 kb on - strandat 4761.966 kb on - strandat 4761.974 kb on - strandat 4761.986 kb on + strandat 4761.987 kb on - strandat 4762.129 kb on - strand, within CA264_20685at 4762.129 kb on - strand, within CA264_20685at 4762.160 kb on + strand, within CA264_20685at 4762.161 kb on - strand, within CA264_20685at 4762.181 kb on + strand, within CA264_20685at 4762.203 kb on + strand, within CA264_20685at 4762.203 kb on + strand, within CA264_20685at 4762.258 kb on + strand, within CA264_20685at 4762.259 kb on - strand, within CA264_20685at 4762.261 kb on - strand, within CA264_20685at 4762.296 kb on - strand, within CA264_20685at 4762.360 kb on + strand, within CA264_20685at 4762.361 kb on - strand, within CA264_20685at 4762.368 kb on + strand, within CA264_20685at 4762.390 kb on + strand, within CA264_20685at 4762.437 kb on + strand, within CA264_20685at 4762.467 kb on - strandat 4762.475 kb on - strandat 4762.502 kb on - strandat 4762.516 kb on + strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.521 kb on - strandat 4762.541 kb on - strandat 4762.541 kb on - strandat 4762.542 kb on + strandat 4762.542 kb on + strandat 4762.543 kb on - strandat 4762.582 kb on + strandat 4762.640 kb on - strandat 4762.641 kb on + strandat 4762.641 kb on + strandat 4762.680 kb on + strandat 4762.681 kb on - strandat 4762.869 kb on - strandat 4762.875 kb on - strandat 4762.877 kb on + strandat 4762.877 kb on + strandat 4762.877 kb on + strandat 4762.878 kb on - strandat 4762.878 kb on - strandat 4762.896 kb on - strandat 4763.001 kb on - strand, within CA264_20690at 4763.032 kb on + strand, within CA264_20690at 4763.162 kb on + strand, within CA264_20690at 4763.212 kb on - strand, within CA264_20690at 4763.223 kb on - strand, within CA264_20690at 4763.253 kb on + strand, within CA264_20690at 4763.254 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.290 kb on + strand, within CA264_20690at 4763.291 kb on - strand, within CA264_20690at 4763.291 kb on - strand, within CA264_20690at 4763.337 kb on - strand, within CA264_20690at 4763.409 kb on - strand, within CA264_20690at 4763.410 kb on + strand, within CA264_20690at 4763.449 kb on + strand, within CA264_20690at 4763.497 kb on - strand, within CA264_20690at 4763.497 kb on - strand, within CA264_20690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
remove
4,761,004 - CA264_20675 0.77 -1.5
4,761,007 + CA264_20675 0.77 +2.1
4,761,025 + CA264_20675 0.79 -1.2
4,761,025 + CA264_20675 0.79 +0.7
4,761,026 - CA264_20675 0.79 +0.8
4,761,061 - CA264_20675 0.81 +0.8
4,761,086 - CA264_20675 0.82 -0.1
4,761,126 + CA264_20675 0.85 -1.2
4,761,126 + CA264_20675 0.85 +0.2
4,761,126 + CA264_20675 0.85 +0.6
4,761,126 + CA264_20675 0.85 -0.4
4,761,127 - CA264_20675 0.85 -0.1
4,761,127 - CA264_20675 0.85 -0.2
4,761,232 + +0.7
4,761,272 + -0.3
4,761,273 - +0.1
4,761,357 - -0.4
4,761,376 - +2.2
4,761,434 + +0.4
4,761,435 - +0.5
4,761,435 - +1.4
4,761,435 - +0.9
4,761,437 - -0.1
4,761,439 + -0.2
4,761,440 - +0.2
4,761,440 - +0.2
4,761,440 - +0.5
4,761,503 + CA264_20680 0.16 +0.4
4,761,505 + CA264_20680 0.17 -0.1
4,761,505 + CA264_20680 0.17 +3.0
4,761,584 - CA264_20680 0.37 -0.2
4,761,584 - CA264_20680 0.37 +1.6
4,761,601 + CA264_20680 0.41 -0.3
4,761,620 + CA264_20680 0.46 +0.4
4,761,648 + CA264_20680 0.53 +0.7
4,761,673 + CA264_20680 0.59 -0.0
4,761,674 - CA264_20680 0.60 +0.6
4,761,728 + CA264_20680 0.73 +0.2
4,761,751 - CA264_20680 0.79 +0.0
4,761,799 - +0.4
4,761,826 - -0.2
4,761,826 - +0.0
4,761,826 - +0.2
4,761,844 - +0.7
4,761,844 - +0.4
4,761,851 + +0.2
4,761,859 + +0.1
4,761,921 + -0.6
4,761,922 - +0.5
4,761,922 - +0.5
4,761,922 - -0.0
4,761,966 - -0.9
4,761,974 - +1.5
4,761,986 + +0.6
4,761,987 - +1.1
4,762,129 - CA264_20685 0.29 +0.1
4,762,129 - CA264_20685 0.29 +1.6
4,762,160 + CA264_20685 0.35 +1.7
4,762,161 - CA264_20685 0.35 -0.2
4,762,181 + CA264_20685 0.38 -0.3
4,762,203 + CA264_20685 0.43 -0.7
4,762,203 + CA264_20685 0.43 +0.8
4,762,258 + CA264_20685 0.53 +0.5
4,762,259 - CA264_20685 0.53 +0.1
4,762,261 - CA264_20685 0.53 -0.2
4,762,296 - CA264_20685 0.60 +0.4
4,762,360 + CA264_20685 0.71 +0.0
4,762,361 - CA264_20685 0.72 -0.6
4,762,368 + CA264_20685 0.73 -1.7
4,762,390 + CA264_20685 0.77 +0.8
4,762,437 + CA264_20685 0.86 +1.4
4,762,467 - -0.0
4,762,475 - -1.0
4,762,502 - +0.9
4,762,516 + +0.9
4,762,517 - +2.2
4,762,517 - -0.2
4,762,517 - +1.2
4,762,517 - +0.2
4,762,521 - +0.8
4,762,541 - +0.8
4,762,541 - -0.2
4,762,542 + -0.2
4,762,542 + -0.1
4,762,543 - +0.2
4,762,582 + +0.1
4,762,640 - +0.6
4,762,641 + -0.7
4,762,641 + +1.0
4,762,680 + +1.7
4,762,681 - -1.0
4,762,869 - -0.5
4,762,875 - +0.2
4,762,877 + +0.5
4,762,877 + -0.3
4,762,877 + +0.4
4,762,878 - -0.2
4,762,878 - +1.7
4,762,896 - +0.0
4,763,001 - CA264_20690 0.12 -0.1
4,763,032 + CA264_20690 0.14 +0.2
4,763,162 + CA264_20690 0.20 +0.3
4,763,212 - CA264_20690 0.22 -0.5
4,763,223 - CA264_20690 0.23 +0.0
4,763,253 + CA264_20690 0.24 -0.3
4,763,254 - CA264_20690 0.24 -0.2
4,763,256 - CA264_20690 0.24 -0.8
4,763,256 - CA264_20690 0.24 +0.5
4,763,256 - CA264_20690 0.24 -0.9
4,763,290 + CA264_20690 0.26 +0.1
4,763,291 - CA264_20690 0.26 -0.5
4,763,291 - CA264_20690 0.26 -0.4
4,763,337 - CA264_20690 0.28 -0.2
4,763,409 - CA264_20690 0.32 +1.2
4,763,410 + CA264_20690 0.32 -0.4
4,763,449 + CA264_20690 0.33 -0.3
4,763,497 - CA264_20690 0.36 -1.2
4,763,497 - CA264_20690 0.36 -0.6

Or see this region's nucleotide sequence