Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19110

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19105 and CA264_19110 are separated by 303 nucleotidesCA264_19110 and CA264_19115 are separated by 352 nucleotides CA264_19105: CA264_19105 - hypothetical protein, at 4,439,375 to 4,440,400 _19105 CA264_19110: CA264_19110 - excinuclease ABC subunit B, at 4,440,704 to 4,442,731 _19110 CA264_19115: CA264_19115 - hypothetical protein, at 4,443,084 to 4,444,004 _19115 Position (kb) 4440 4441 4442 4443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4439.720 kb on + strand, within CA264_19105at 4439.721 kb on - strand, within CA264_19105at 4439.826 kb on - strand, within CA264_19105at 4439.888 kb on + strand, within CA264_19105at 4439.888 kb on + strand, within CA264_19105at 4440.003 kb on - strand, within CA264_19105at 4440.003 kb on - strand, within CA264_19105at 4440.136 kb on + strand, within CA264_19105at 4440.137 kb on - strand, within CA264_19105at 4440.141 kb on - strand, within CA264_19105at 4440.141 kb on - strand, within CA264_19105at 4440.141 kb on - strand, within CA264_19105at 4440.181 kb on - strand, within CA264_19105at 4440.227 kb on + strand, within CA264_19105at 4440.228 kb on - strand, within CA264_19105at 4440.228 kb on - strand, within CA264_19105at 4440.280 kb on - strand, within CA264_19105at 4440.286 kb on - strand, within CA264_19105at 4440.320 kb on + strandat 4440.408 kb on + strandat 4440.409 kb on - strandat 4440.419 kb on + strandat 4440.499 kb on + strandat 4440.553 kb on + strandat 4440.554 kb on - strandat 4440.559 kb on - strandat 4440.619 kb on - strandat 4440.651 kb on - strandat 4440.676 kb on + strandat 4440.683 kb on - strandat 4440.759 kb on + strandat 4440.829 kb on + strandat 4440.959 kb on + strand, within CA264_19110at 4440.981 kb on - strand, within CA264_19110at 4440.981 kb on - strand, within CA264_19110at 4441.221 kb on - strand, within CA264_19110at 4441.223 kb on - strand, within CA264_19110at 4441.223 kb on - strand, within CA264_19110at 4441.340 kb on + strand, within CA264_19110at 4441.491 kb on - strand, within CA264_19110at 4441.554 kb on + strand, within CA264_19110at 4441.597 kb on - strand, within CA264_19110at 4441.615 kb on - strand, within CA264_19110at 4441.623 kb on - strand, within CA264_19110at 4441.623 kb on - strand, within CA264_19110at 4441.623 kb on - strand, within CA264_19110at 4441.708 kb on - strand, within CA264_19110at 4441.923 kb on + strand, within CA264_19110at 4442.091 kb on - strand, within CA264_19110at 4442.116 kb on - strand, within CA264_19110at 4442.116 kb on - strand, within CA264_19110at 4442.120 kb on + strand, within CA264_19110at 4442.254 kb on + strand, within CA264_19110at 4442.255 kb on - strand, within CA264_19110at 4442.351 kb on - strand, within CA264_19110at 4442.351 kb on - strand, within CA264_19110at 4442.355 kb on - strand, within CA264_19110at 4442.534 kb on + strandat 4442.534 kb on + strandat 4442.557 kb on + strandat 4442.557 kb on + strandat 4442.720 kb on - strandat 4442.746 kb on - strandat 4442.748 kb on + strandat 4442.755 kb on - strandat 4442.757 kb on - strandat 4442.778 kb on + strandat 4442.858 kb on - strandat 4442.858 kb on - strandat 4442.858 kb on - strandat 4442.896 kb on + strandat 4442.907 kb on - strandat 4442.921 kb on - strandat 4443.171 kb on + strandat 4443.186 kb on + strand, within CA264_19115at 4443.187 kb on - strand, within CA264_19115at 4443.187 kb on - strand, within CA264_19115at 4443.207 kb on + strand, within CA264_19115at 4443.250 kb on - strand, within CA264_19115at 4443.252 kb on + strand, within CA264_19115at 4443.253 kb on - strand, within CA264_19115at 4443.322 kb on + strand, within CA264_19115at 4443.352 kb on + strand, within CA264_19115at 4443.353 kb on - strand, within CA264_19115at 4443.486 kb on + strand, within CA264_19115at 4443.664 kb on + strand, within CA264_19115at 4443.727 kb on - strand, within CA264_19115at 4443.727 kb on - strand, within CA264_19115

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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4,439,720 + CA264_19105 0.34 -0.8
4,439,721 - CA264_19105 0.34 +0.1
4,439,826 - CA264_19105 0.44 +0.2
4,439,888 + CA264_19105 0.50 -0.8
4,439,888 + CA264_19105 0.50 +1.1
4,440,003 - CA264_19105 0.61 +0.6
4,440,003 - CA264_19105 0.61 -0.5
4,440,136 + CA264_19105 0.74 +0.8
4,440,137 - CA264_19105 0.74 -0.7
4,440,141 - CA264_19105 0.75 +0.3
4,440,141 - CA264_19105 0.75 +0.0
4,440,141 - CA264_19105 0.75 +0.4
4,440,181 - CA264_19105 0.79 -0.7
4,440,227 + CA264_19105 0.83 +0.7
4,440,228 - CA264_19105 0.83 +1.2
4,440,228 - CA264_19105 0.83 -2.3
4,440,280 - CA264_19105 0.88 -0.7
4,440,286 - CA264_19105 0.89 +1.5
4,440,320 + +1.4
4,440,408 + +0.2
4,440,409 - +0.9
4,440,419 + +0.3
4,440,499 + -0.2
4,440,553 + +0.3
4,440,554 - -0.2
4,440,559 - -0.0
4,440,619 - +0.4
4,440,651 - +0.2
4,440,676 + -0.8
4,440,683 - +0.5
4,440,759 + -0.2
4,440,829 + -1.1
4,440,959 + CA264_19110 0.13 +0.6
4,440,981 - CA264_19110 0.14 +0.5
4,440,981 - CA264_19110 0.14 -0.6
4,441,221 - CA264_19110 0.25 -0.3
4,441,223 - CA264_19110 0.26 -0.0
4,441,223 - CA264_19110 0.26 -1.1
4,441,340 + CA264_19110 0.31 -0.3
4,441,491 - CA264_19110 0.39 -0.5
4,441,554 + CA264_19110 0.42 +0.2
4,441,597 - CA264_19110 0.44 -0.1
4,441,615 - CA264_19110 0.45 +0.5
4,441,623 - CA264_19110 0.45 -1.3
4,441,623 - CA264_19110 0.45 +3.0
4,441,623 - CA264_19110 0.45 -1.1
4,441,708 - CA264_19110 0.50 +0.1
4,441,923 + CA264_19110 0.60 -0.2
4,442,091 - CA264_19110 0.68 -1.0
4,442,116 - CA264_19110 0.70 +2.4
4,442,116 - CA264_19110 0.70 -0.2
4,442,120 + CA264_19110 0.70 +0.1
4,442,254 + CA264_19110 0.76 -0.0
4,442,255 - CA264_19110 0.76 +1.2
4,442,351 - CA264_19110 0.81 +0.2
4,442,351 - CA264_19110 0.81 +0.4
4,442,355 - CA264_19110 0.81 +0.5
4,442,534 + -0.5
4,442,534 + -0.2
4,442,557 + +0.4
4,442,557 + +0.1
4,442,720 - -0.8
4,442,746 - -1.6
4,442,748 + +0.5
4,442,755 - +0.1
4,442,757 - +0.6
4,442,778 + -0.3
4,442,858 - +1.3
4,442,858 - -0.3
4,442,858 - -0.0
4,442,896 + -1.0
4,442,907 - -0.4
4,442,921 - +0.8
4,443,171 + -0.3
4,443,186 + CA264_19115 0.11 +0.5
4,443,187 - CA264_19115 0.11 -0.4
4,443,187 - CA264_19115 0.11 -0.2
4,443,207 + CA264_19115 0.13 +1.8
4,443,250 - CA264_19115 0.18 +0.9
4,443,252 + CA264_19115 0.18 +0.2
4,443,253 - CA264_19115 0.18 +0.1
4,443,322 + CA264_19115 0.26 -1.0
4,443,352 + CA264_19115 0.29 -1.2
4,443,353 - CA264_19115 0.29 +0.7
4,443,486 + CA264_19115 0.44 -0.4
4,443,664 + CA264_19115 0.63 -0.6
4,443,727 - CA264_19115 0.70 +0.8
4,443,727 - CA264_19115 0.70 -0.2

Or see this region's nucleotide sequence