Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18150

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18145 and CA264_18150 are separated by 368 nucleotidesCA264_18150 and CA264_18155 are separated by 513 nucleotides CA264_18145: CA264_18145 - ribonuclease, at 4,218,157 to 4,219,470 _18145 CA264_18150: CA264_18150 - energy-dependent translational throttle protein EttA, at 4,219,839 to 4,221,509 _18150 CA264_18155: CA264_18155 - serine hydrolase, at 4,222,023 to 4,223,594 _18155 Position (kb) 4219 4220 4221 4222Strain fitness (log2 ratio) -2 -1 0 1at 4219.087 kb on + strand, within CA264_18145at 4219.104 kb on + strand, within CA264_18145at 4219.132 kb on - strand, within CA264_18145at 4219.175 kb on + strand, within CA264_18145at 4219.176 kb on - strand, within CA264_18145at 4219.214 kb on - strand, within CA264_18145at 4219.294 kb on + strand, within CA264_18145at 4219.331 kb on + strand, within CA264_18145at 4219.392 kb on + strandat 4219.473 kb on + strandat 4219.502 kb on - strandat 4219.532 kb on + strandat 4219.543 kb on + strandat 4219.543 kb on + strandat 4219.543 kb on + strandat 4219.735 kb on + strandat 4219.755 kb on - strandat 4219.810 kb on + strandat 4219.810 kb on + strandat 4219.812 kb on + strandat 4219.813 kb on - strandat 4219.815 kb on + strandat 4219.828 kb on + strandat 4219.910 kb on + strandat 4219.910 kb on + strandat 4219.910 kb on + strandat 4219.911 kb on - strandat 4219.918 kb on + strandat 4219.920 kb on + strandat 4219.920 kb on + strandat 4219.921 kb on - strandat 4219.921 kb on - strandat 4220.125 kb on + strand, within CA264_18150at 4220.508 kb on + strand, within CA264_18150at 4220.509 kb on - strand, within CA264_18150at 4220.561 kb on + strand, within CA264_18150at 4220.991 kb on - strand, within CA264_18150at 4221.023 kb on - strand, within CA264_18150at 4221.092 kb on + strand, within CA264_18150at 4221.093 kb on - strand, within CA264_18150at 4221.129 kb on + strand, within CA264_18150at 4221.129 kb on + strand, within CA264_18150at 4221.172 kb on - strand, within CA264_18150at 4221.429 kb on + strandat 4221.429 kb on + strandat 4221.430 kb on - strandat 4221.430 kb on - strandat 4221.438 kb on + strandat 4221.439 kb on - strandat 4221.472 kb on + strandat 4221.508 kb on - strandat 4221.615 kb on - strandat 4221.733 kb on + strandat 4221.799 kb on - strandat 4221.799 kb on - strandat 4221.800 kb on + strandat 4221.806 kb on + strandat 4221.806 kb on + strandat 4221.807 kb on - strandat 4221.807 kb on - strandat 4221.812 kb on + strandat 4221.843 kb on - strandat 4221.915 kb on + strandat 4221.962 kb on + strandat 4221.982 kb on - strandat 4221.982 kb on - strandat 4222.025 kb on - strandat 4222.239 kb on + strand, within CA264_18155at 4222.239 kb on + strand, within CA264_18155at 4222.239 kb on + strand, within CA264_18155at 4222.292 kb on - strand, within CA264_18155at 4222.303 kb on + strand, within CA264_18155at 4222.462 kb on + strand, within CA264_18155

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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4,219,087 + CA264_18145 0.71 -1.5
4,219,104 + CA264_18145 0.72 -1.9
4,219,132 - CA264_18145 0.74 -0.3
4,219,175 + CA264_18145 0.77 -0.1
4,219,176 - CA264_18145 0.78 -0.1
4,219,214 - CA264_18145 0.80 -0.8
4,219,294 + CA264_18145 0.87 -0.1
4,219,331 + CA264_18145 0.89 -0.3
4,219,392 + +0.7
4,219,473 + -0.2
4,219,502 - -0.7
4,219,532 + -0.1
4,219,543 + -0.3
4,219,543 + -0.4
4,219,543 + -0.2
4,219,735 + -0.6
4,219,755 - -0.3
4,219,810 + +0.3
4,219,810 + -0.7
4,219,812 + +0.4
4,219,813 - +0.1
4,219,815 + +0.8
4,219,828 + -0.2
4,219,910 + -0.7
4,219,910 + -0.9
4,219,910 + +0.4
4,219,911 - +0.3
4,219,918 + -0.9
4,219,920 + -1.3
4,219,920 + -0.8
4,219,921 - -1.0
4,219,921 - +0.6
4,220,125 + CA264_18150 0.17 -0.4
4,220,508 + CA264_18150 0.40 -0.2
4,220,509 - CA264_18150 0.40 -0.5
4,220,561 + CA264_18150 0.43 -1.9
4,220,991 - CA264_18150 0.69 -1.3
4,221,023 - CA264_18150 0.71 -0.4
4,221,092 + CA264_18150 0.75 -1.2
4,221,093 - CA264_18150 0.75 -1.8
4,221,129 + CA264_18150 0.77 -0.4
4,221,129 + CA264_18150 0.77 -0.5
4,221,172 - CA264_18150 0.80 -0.3
4,221,429 + +0.8
4,221,429 + -0.5
4,221,430 - -0.3
4,221,430 - -0.8
4,221,438 + +1.2
4,221,439 - -0.6
4,221,472 + -2.0
4,221,508 - -1.3
4,221,615 - +1.0
4,221,733 + -1.8
4,221,799 - +1.6
4,221,799 - -0.5
4,221,800 + +0.5
4,221,806 + +0.2
4,221,806 + -0.2
4,221,807 - -0.7
4,221,807 - +0.3
4,221,812 + -0.6
4,221,843 - +0.1
4,221,915 + +0.5
4,221,962 + -0.7
4,221,982 - +1.0
4,221,982 - -1.2
4,222,025 - +0.7
4,222,239 + CA264_18155 0.14 +0.1
4,222,239 + CA264_18155 0.14 +0.5
4,222,239 + CA264_18155 0.14 -0.8
4,222,292 - CA264_18155 0.17 +0.2
4,222,303 + CA264_18155 0.18 -0.3
4,222,462 + CA264_18155 0.28 -0.5

Or see this region's nucleotide sequence