Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17630 and CA264_17635 are separated by 9 nucleotides CA264_17635 and CA264_17640 are separated by 224 nucleotides CA264_17640 and CA264_17645 are separated by 159 nucleotides
CA264_17630: CA264_17630 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 4,105,635 to 4,106,132
_17630
CA264_17635: CA264_17635 - hypothetical protein, at 4,106,142 to 4,106,822
_17635
CA264_17640: CA264_17640 - acyl-CoA dehydrogenase, at 4,107,047 to 4,108,186
_17640
CA264_17645: CA264_17645 - AraC family transcriptional regulator, at 4,108,346 to 4,109,272
_17645
Position (kb) 4107
4108
4109 Strain fitness (log2 ratio) -1
0
1
2 at 4106.119 kb on + strand at 4106.135 kb on + strand at 4106.136 kb on - strand at 4106.154 kb on + strand at 4106.155 kb on - strand at 4106.155 kb on - strand at 4106.159 kb on + strand at 4106.186 kb on + strand at 4106.226 kb on + strand, within CA264_17635 at 4106.308 kb on + strand, within CA264_17635 at 4106.308 kb on + strand, within CA264_17635 at 4106.308 kb on + strand, within CA264_17635 at 4106.309 kb on - strand, within CA264_17635 at 4106.314 kb on + strand, within CA264_17635 at 4106.314 kb on + strand, within CA264_17635 at 4106.315 kb on - strand, within CA264_17635 at 4106.346 kb on + strand, within CA264_17635 at 4106.383 kb on - strand, within CA264_17635 at 4106.388 kb on + strand, within CA264_17635 at 4106.463 kb on + strand, within CA264_17635 at 4106.463 kb on + strand, within CA264_17635 at 4106.557 kb on + strand, within CA264_17635 at 4106.606 kb on + strand, within CA264_17635 at 4106.748 kb on + strand, within CA264_17635 at 4106.748 kb on + strand, within CA264_17635 at 4106.748 kb on + strand, within CA264_17635 at 4106.787 kb on + strand at 4106.787 kb on + strand at 4106.787 kb on + strand at 4106.787 kb on + strand at 4106.787 kb on + strand at 4106.788 kb on - strand at 4106.790 kb on + strand at 4106.790 kb on + strand at 4106.794 kb on + strand at 4106.795 kb on - strand at 4106.820 kb on + strand at 4106.833 kb on - strand at 4106.927 kb on - strand at 4106.953 kb on + strand at 4107.040 kb on - strand at 4107.046 kb on + strand at 4107.046 kb on + strand at 4107.217 kb on + strand, within CA264_17640 at 4107.374 kb on + strand, within CA264_17640 at 4107.374 kb on + strand, within CA264_17640 at 4107.375 kb on - strand, within CA264_17640 at 4107.375 kb on - strand, within CA264_17640 at 4107.550 kb on - strand, within CA264_17640 at 4107.550 kb on - strand, within CA264_17640 at 4107.563 kb on + strand, within CA264_17640 at 4107.716 kb on - strand, within CA264_17640 at 4107.803 kb on - strand, within CA264_17640 at 4107.864 kb on + strand, within CA264_17640 at 4107.896 kb on - strand, within CA264_17640 at 4108.057 kb on - strand, within CA264_17640 at 4108.086 kb on - strand at 4108.226 kb on + strand at 4108.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 4,106,119 + -0.1 4,106,135 + -0.0 4,106,136 - -0.4 4,106,154 + -0.6 4,106,155 - -0.2 4,106,155 - +0.3 4,106,159 + -0.4 4,106,186 + -0.1 4,106,226 + CA264_17635 0.12 -0.2 4,106,308 + CA264_17635 0.24 +1.3 4,106,308 + CA264_17635 0.24 -0.1 4,106,308 + CA264_17635 0.24 +0.2 4,106,309 - CA264_17635 0.25 -0.2 4,106,314 + CA264_17635 0.25 -0.6 4,106,314 + CA264_17635 0.25 +0.7 4,106,315 - CA264_17635 0.25 +0.3 4,106,346 + CA264_17635 0.30 -0.8 4,106,383 - CA264_17635 0.35 +1.8 4,106,388 + CA264_17635 0.36 -0.5 4,106,463 + CA264_17635 0.47 -0.2 4,106,463 + CA264_17635 0.47 -0.6 4,106,557 + CA264_17635 0.61 +0.5 4,106,606 + CA264_17635 0.68 -0.9 4,106,748 + CA264_17635 0.89 -0.4 4,106,748 + CA264_17635 0.89 +0.9 4,106,748 + CA264_17635 0.89 +0.1 4,106,787 + -0.3 4,106,787 + -0.8 4,106,787 + +0.4 4,106,787 + -0.5 4,106,787 + -0.6 4,106,788 - -1.6 4,106,790 + -0.1 4,106,790 + +0.9 4,106,794 + +0.1 4,106,795 - +0.0 4,106,820 + -0.4 4,106,833 - -0.6 4,106,927 - -0.5 4,106,953 + +0.1 4,107,040 - +0.8 4,107,046 + +0.6 4,107,046 + +0.1 4,107,217 + CA264_17640 0.15 -0.5 4,107,374 + CA264_17640 0.29 -0.5 4,107,374 + CA264_17640 0.29 -0.4 4,107,375 - CA264_17640 0.29 +0.3 4,107,375 - CA264_17640 0.29 +0.9 4,107,550 - CA264_17640 0.44 +0.4 4,107,550 - CA264_17640 0.44 +0.5 4,107,563 + CA264_17640 0.45 +1.6 4,107,716 - CA264_17640 0.59 +0.1 4,107,803 - CA264_17640 0.66 +1.2 4,107,864 + CA264_17640 0.72 +0.3 4,107,896 - CA264_17640 0.74 -0.1 4,108,057 - CA264_17640 0.89 -0.2 4,108,086 - -0.2 4,108,226 + +0.9 4,108,317 + +0.2
Or see this region's nucleotide sequence