Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15425

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15420 and CA264_15425 are separated by 41 nucleotidesCA264_15425 and CA264_15430 are separated by 438 nucleotides CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132 _15420 CA264_15425: CA264_15425 - DUF4834 domain-containing protein, at 3,614,174 to 3,614,452 _15425 CA264_15430: CA264_15430 - carbamoyl phosphate synthase large subunit, at 3,614,891 to 3,617,704 _15430 Position (kb) 3614 3615Strain fitness (log2 ratio) -1 0 1 2at 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.166 kb on + strandat 3614.181 kb on - strandat 3614.200 kb on - strandat 3614.328 kb on + strand, within CA264_15425at 3614.384 kb on + strand, within CA264_15425at 3614.404 kb on + strand, within CA264_15425at 3614.435 kb on - strandat 3614.438 kb on + strandat 3614.480 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.486 kb on + strandat 3614.487 kb on - strandat 3614.515 kb on - strandat 3614.570 kb on + strandat 3614.577 kb on + strandat 3614.577 kb on + strandat 3614.652 kb on - strandat 3614.664 kb on + strandat 3614.669 kb on + strandat 3614.670 kb on - strandat 3614.670 kb on - strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.684 kb on - strandat 3614.684 kb on - strandat 3614.685 kb on + strandat 3614.692 kb on + strandat 3614.837 kb on + strandat 3614.838 kb on - strandat 3614.878 kb on - strandat 3614.883 kb on + strandat 3614.885 kb on + strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.892 kb on + strandat 3614.893 kb on - strandat 3614.938 kb on - strandat 3614.959 kb on + strandat 3615.031 kb on - strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.068 kb on - strandat 3615.082 kb on + strandat 3615.082 kb on + strandat 3615.083 kb on - strandat 3615.127 kb on - strandat 3615.135 kb on + strandat 3615.136 kb on - strandat 3615.148 kb on - strandat 3615.172 kb on + strandat 3615.173 kb on - strand, within CA264_15430at 3615.205 kb on - strand, within CA264_15430at 3615.339 kb on + strand, within CA264_15430at 3615.397 kb on - strand, within CA264_15430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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3,614,132 + -0.7
3,614,132 + -0.5
3,614,132 + +0.8
3,614,166 + -0.3
3,614,181 - -0.5
3,614,200 - -0.5
3,614,328 + CA264_15425 0.55 +0.4
3,614,384 + CA264_15425 0.75 +0.2
3,614,404 + CA264_15425 0.82 -0.3
3,614,435 - +0.2
3,614,438 + +0.2
3,614,480 + +2.0
3,614,484 + -0.8
3,614,484 + +0.0
3,614,484 + +0.7
3,614,486 + -0.3
3,614,487 - -1.0
3,614,515 - -1.5
3,614,570 + -0.4
3,614,577 + +0.3
3,614,577 + +0.2
3,614,652 - -0.9
3,614,664 + -0.8
3,614,669 + -0.1
3,614,670 - -0.7
3,614,670 - -1.2
3,614,683 + -0.4
3,614,683 + +0.6
3,614,683 + -0.2
3,614,683 + +0.1
3,614,684 - -1.3
3,614,684 - -1.4
3,614,685 + -0.3
3,614,692 + -0.3
3,614,837 + +0.7
3,614,838 - -1.1
3,614,878 - -0.5
3,614,883 + +0.5
3,614,885 + -0.1
3,614,886 - +0.7
3,614,886 - +0.6
3,614,886 - -1.6
3,614,892 + +0.8
3,614,893 - -0.1
3,614,938 - -0.1
3,614,959 + -1.6
3,615,031 - +0.2
3,615,067 + -0.7
3,615,067 + -0.6
3,615,067 + +0.1
3,615,067 + +0.4
3,615,068 - -0.0
3,615,082 + -0.1
3,615,082 + -0.8
3,615,083 - -0.4
3,615,127 - +0.4
3,615,135 + -1.0
3,615,136 - -0.4
3,615,148 - -0.4
3,615,172 + +0.7
3,615,173 - CA264_15430 0.10 +0.6
3,615,205 - CA264_15430 0.11 -0.6
3,615,339 + CA264_15430 0.16 +1.8
3,615,397 - CA264_15430 0.18 -0.4

Or see this region's nucleotide sequence