Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10970

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10965 and CA264_10970 are separated by 116 nucleotidesCA264_10970 and CA264_10975 are separated by 266 nucleotidesCA264_10975 and CA264_10980 are separated by 54 nucleotides CA264_10965: CA264_10965 - oligoendopeptidase F, at 2,528,338 to 2,530,071 _10965 CA264_10970: CA264_10970 - ferredoxin, at 2,530,188 to 2,531,276 _10970 CA264_10975: CA264_10975 - Pathogenesis-related transcriptional factor and ERF protein, at 2,531,543 to 2,532,112 _10975 CA264_10980: CA264_10980 - peptidase M23, at 2,532,167 to 2,532,883 _10980 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -2 -1 0 1at 2529.275 kb on - strand, within CA264_10965at 2529.307 kb on - strand, within CA264_10965at 2529.307 kb on - strand, within CA264_10965at 2529.316 kb on - strand, within CA264_10965at 2529.344 kb on + strand, within CA264_10965at 2529.374 kb on + strand, within CA264_10965at 2529.375 kb on - strand, within CA264_10965at 2529.605 kb on + strand, within CA264_10965at 2529.606 kb on - strand, within CA264_10965at 2529.693 kb on - strand, within CA264_10965at 2529.695 kb on - strand, within CA264_10965at 2529.858 kb on - strand, within CA264_10965at 2530.016 kb on + strandat 2530.073 kb on - strandat 2530.084 kb on + strandat 2530.096 kb on - strandat 2530.171 kb on + strandat 2530.174 kb on - strandat 2530.178 kb on - strandat 2530.331 kb on + strand, within CA264_10970at 2530.438 kb on + strand, within CA264_10970at 2530.442 kb on + strand, within CA264_10970at 2530.443 kb on - strand, within CA264_10970at 2530.443 kb on - strand, within CA264_10970at 2530.465 kb on - strand, within CA264_10970at 2530.489 kb on - strand, within CA264_10970at 2530.636 kb on + strand, within CA264_10970at 2530.636 kb on + strand, within CA264_10970at 2530.637 kb on - strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.640 kb on - strand, within CA264_10970at 2530.695 kb on - strand, within CA264_10970at 2530.695 kb on - strand, within CA264_10970at 2530.744 kb on + strand, within CA264_10970at 2530.745 kb on - strand, within CA264_10970at 2530.745 kb on - strand, within CA264_10970at 2530.751 kb on - strand, within CA264_10970at 2530.774 kb on + strand, within CA264_10970at 2530.811 kb on + strand, within CA264_10970at 2530.811 kb on + strand, within CA264_10970at 2530.837 kb on + strand, within CA264_10970at 2531.008 kb on - strand, within CA264_10970at 2531.029 kb on + strand, within CA264_10970at 2531.029 kb on + strand, within CA264_10970at 2531.030 kb on - strand, within CA264_10970at 2531.061 kb on + strand, within CA264_10970at 2531.062 kb on - strand, within CA264_10970at 2531.149 kb on - strand, within CA264_10970at 2531.244 kb on + strandat 2531.258 kb on + strandat 2531.259 kb on - strandat 2531.270 kb on + strandat 2531.271 kb on - strandat 2531.301 kb on - strandat 2531.301 kb on - strandat 2531.301 kb on - strandat 2531.311 kb on - strandat 2531.341 kb on - strandat 2531.364 kb on - strandat 2531.469 kb on + strandat 2531.498 kb on + strandat 2531.498 kb on + strandat 2531.509 kb on - strandat 2531.511 kb on + strandat 2531.529 kb on - strandat 2531.599 kb on + strandat 2531.609 kb on + strand, within CA264_10975at 2531.738 kb on + strand, within CA264_10975at 2531.802 kb on + strand, within CA264_10975at 2531.803 kb on - strand, within CA264_10975at 2531.939 kb on + strand, within CA264_10975at 2531.957 kb on + strand, within CA264_10975at 2531.958 kb on - strand, within CA264_10975at 2531.997 kb on + strand, within CA264_10975at 2532.018 kb on - strand, within CA264_10975at 2532.166 kb on + strandat 2532.166 kb on + strandat 2532.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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2,529,275 - CA264_10965 0.54 +1.4
2,529,307 - CA264_10965 0.56 -0.8
2,529,307 - CA264_10965 0.56 -0.4
2,529,316 - CA264_10965 0.56 +0.8
2,529,344 + CA264_10965 0.58 -0.6
2,529,374 + CA264_10965 0.60 -0.1
2,529,375 - CA264_10965 0.60 -0.6
2,529,605 + CA264_10965 0.73 -0.6
2,529,606 - CA264_10965 0.73 -0.6
2,529,693 - CA264_10965 0.78 -0.7
2,529,695 - CA264_10965 0.78 +0.0
2,529,858 - CA264_10965 0.88 -0.2
2,530,016 + -0.8
2,530,073 - +0.4
2,530,084 + -0.5
2,530,096 - -0.1
2,530,171 + +0.3
2,530,174 - -0.8
2,530,178 - +0.6
2,530,331 + CA264_10970 0.13 -0.1
2,530,438 + CA264_10970 0.23 +0.6
2,530,442 + CA264_10970 0.23 -0.3
2,530,443 - CA264_10970 0.23 +0.0
2,530,443 - CA264_10970 0.23 -0.2
2,530,465 - CA264_10970 0.25 +0.1
2,530,489 - CA264_10970 0.28 -0.4
2,530,636 + CA264_10970 0.41 -0.5
2,530,636 + CA264_10970 0.41 +0.3
2,530,637 - CA264_10970 0.41 +0.2
2,530,639 + CA264_10970 0.41 +0.8
2,530,639 + CA264_10970 0.41 +0.8
2,530,639 + CA264_10970 0.41 +0.6
2,530,640 - CA264_10970 0.42 +0.5
2,530,695 - CA264_10970 0.47 +0.9
2,530,695 - CA264_10970 0.47 +0.7
2,530,744 + CA264_10970 0.51 +0.0
2,530,745 - CA264_10970 0.51 +0.9
2,530,745 - CA264_10970 0.51 -0.6
2,530,751 - CA264_10970 0.52 -0.1
2,530,774 + CA264_10970 0.54 -1.6
2,530,811 + CA264_10970 0.57 +0.3
2,530,811 + CA264_10970 0.57 +0.3
2,530,837 + CA264_10970 0.60 +0.8
2,531,008 - CA264_10970 0.75 +0.7
2,531,029 + CA264_10970 0.77 +0.1
2,531,029 + CA264_10970 0.77 +0.2
2,531,030 - CA264_10970 0.77 +0.1
2,531,061 + CA264_10970 0.80 +0.3
2,531,062 - CA264_10970 0.80 +0.5
2,531,149 - CA264_10970 0.88 +0.4
2,531,244 + +0.6
2,531,258 + +0.4
2,531,259 - +0.7
2,531,270 + +0.2
2,531,271 - -0.0
2,531,301 - +0.6
2,531,301 - -0.3
2,531,301 - +0.2
2,531,311 - -0.5
2,531,341 - +0.0
2,531,364 - +0.7
2,531,469 + +0.1
2,531,498 + +0.5
2,531,498 + +0.8
2,531,509 - -0.6
2,531,511 + -0.6
2,531,529 - -0.2
2,531,599 + -1.7
2,531,609 + CA264_10975 0.12 -1.0
2,531,738 + CA264_10975 0.34 -1.5
2,531,802 + CA264_10975 0.45 -1.0
2,531,803 - CA264_10975 0.46 -1.7
2,531,939 + CA264_10975 0.69 -2.1
2,531,957 + CA264_10975 0.73 -0.8
2,531,958 - CA264_10975 0.73 -2.5
2,531,997 + CA264_10975 0.80 -0.2
2,532,018 - CA264_10975 0.83 -1.1
2,532,166 + -0.4
2,532,166 + -0.4
2,532,167 - -0.0

Or see this region's nucleotide sequence