Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07275

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07270 and CA264_07275 are separated by 317 nucleotidesCA264_07275 and CA264_07280 are separated by 1 nucleotides CA264_07270: CA264_07270 - hypothetical protein, at 1,679,396 to 1,679,869 _07270 CA264_07275: CA264_07275 - hypothetical protein, at 1,680,187 to 1,680,816 _07275 CA264_07280: CA264_07280 - hypothetical protein, at 1,680,818 to 1,681,663 _07280 Position (kb) 1680 1681Strain fitness (log2 ratio) -2 -1 0 1 2at 1679.197 kb on - strandat 1679.233 kb on - strandat 1679.244 kb on - strandat 1679.245 kb on + strandat 1679.247 kb on + strandat 1679.248 kb on - strandat 1679.248 kb on - strandat 1679.332 kb on - strandat 1679.344 kb on - strandat 1679.348 kb on - strandat 1679.411 kb on + strandat 1679.411 kb on + strandat 1679.437 kb on + strandat 1679.516 kb on - strand, within CA264_07270at 1679.628 kb on + strand, within CA264_07270at 1679.628 kb on + strand, within CA264_07270at 1679.629 kb on - strand, within CA264_07270at 1679.658 kb on + strand, within CA264_07270at 1679.686 kb on - strand, within CA264_07270at 1679.715 kb on + strand, within CA264_07270at 1679.716 kb on - strand, within CA264_07270at 1679.716 kb on - strand, within CA264_07270at 1679.772 kb on - strand, within CA264_07270at 1679.857 kb on - strandat 1679.887 kb on + strandat 1679.888 kb on - strandat 1679.889 kb on + strandat 1679.890 kb on - strandat 1679.890 kb on - strandat 1679.892 kb on - strandat 1679.892 kb on - strandat 1679.927 kb on + strandat 1679.927 kb on + strandat 1679.929 kb on + strandat 1679.932 kb on + strandat 1679.933 kb on - strandat 1679.933 kb on - strandat 1679.936 kb on + strandat 1679.938 kb on + strandat 1679.939 kb on - strandat 1679.943 kb on + strandat 1679.959 kb on + strandat 1679.961 kb on + strandat 1679.969 kb on - strandat 1679.977 kb on - strandat 1679.977 kb on - strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.981 kb on - strandat 1680.010 kb on - strandat 1680.183 kb on + strandat 1680.250 kb on + strand, within CA264_07275at 1680.309 kb on + strand, within CA264_07275at 1680.310 kb on - strand, within CA264_07275at 1680.310 kb on - strand, within CA264_07275at 1680.376 kb on + strand, within CA264_07275at 1680.377 kb on - strand, within CA264_07275at 1680.393 kb on - strand, within CA264_07275at 1680.440 kb on - strand, within CA264_07275at 1680.496 kb on - strand, within CA264_07275at 1680.522 kb on + strand, within CA264_07275at 1680.537 kb on - strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.542 kb on - strand, within CA264_07275at 1680.553 kb on + strand, within CA264_07275at 1680.553 kb on + strand, within CA264_07275at 1680.554 kb on - strand, within CA264_07275at 1680.557 kb on + strand, within CA264_07275at 1680.557 kb on + strand, within CA264_07275at 1680.558 kb on - strand, within CA264_07275at 1680.647 kb on - strand, within CA264_07275at 1680.681 kb on - strand, within CA264_07275at 1680.696 kb on + strand, within CA264_07275at 1680.706 kb on + strand, within CA264_07275at 1680.727 kb on + strand, within CA264_07275at 1680.734 kb on + strand, within CA264_07275at 1680.734 kb on + strand, within CA264_07275at 1680.774 kb on - strandat 1680.774 kb on - strandat 1680.815 kb on - strandat 1680.815 kb on - strandat 1680.819 kb on + strandat 1680.853 kb on - strandat 1680.904 kb on + strand, within CA264_07280at 1680.904 kb on + strand, within CA264_07280at 1680.924 kb on + strand, within CA264_07280at 1680.924 kb on + strand, within CA264_07280at 1680.961 kb on - strand, within CA264_07280at 1680.991 kb on + strand, within CA264_07280at 1681.027 kb on + strand, within CA264_07280at 1681.054 kb on - strand, within CA264_07280at 1681.218 kb on + strand, within CA264_07280at 1681.218 kb on + strand, within CA264_07280at 1681.288 kb on + strand, within CA264_07280at 1681.289 kb on - strand, within CA264_07280at 1681.296 kb on - strand, within CA264_07280at 1681.296 kb on - strand, within CA264_07280at 1681.440 kb on + strand, within CA264_07280at 1681.441 kb on - strand, within CA264_07280at 1681.503 kb on + strand, within CA264_07280at 1681.506 kb on + strand, within CA264_07280at 1681.529 kb on + strand, within CA264_07280at 1681.577 kb on + strand, within CA264_07280at 1681.578 kb on - strand, within CA264_07280at 1681.594 kb on + strandat 1681.644 kb on + strandat 1681.645 kb on - strandat 1681.655 kb on + strandat 1681.676 kb on + strandat 1681.707 kb on + strandat 1681.708 kb on - strandat 1681.714 kb on - strandat 1681.771 kb on - strandat 1681.772 kb on + strandat 1681.773 kb on - strandat 1681.773 kb on - strandat 1681.780 kb on + strandat 1681.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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1,679,197 - +0.3
1,679,233 - +0.1
1,679,244 - -1.9
1,679,245 + +1.2
1,679,247 + +0.0
1,679,248 - -0.5
1,679,248 - -0.1
1,679,332 - -0.5
1,679,344 - +0.2
1,679,348 - +0.1
1,679,411 + -0.3
1,679,411 + -0.1
1,679,437 + -0.3
1,679,516 - CA264_07270 0.25 +0.4
1,679,628 + CA264_07270 0.49 +0.1
1,679,628 + CA264_07270 0.49 -0.5
1,679,629 - CA264_07270 0.49 -0.1
1,679,658 + CA264_07270 0.55 -0.5
1,679,686 - CA264_07270 0.61 +0.4
1,679,715 + CA264_07270 0.67 +0.7
1,679,716 - CA264_07270 0.68 +1.0
1,679,716 - CA264_07270 0.68 -0.4
1,679,772 - CA264_07270 0.79 -0.1
1,679,857 - -0.7
1,679,887 + +0.3
1,679,888 - -0.2
1,679,889 + -0.0
1,679,890 - +0.3
1,679,890 - -0.5
1,679,892 - -0.5
1,679,892 - +0.1
1,679,927 + +0.5
1,679,927 + +0.3
1,679,929 + -0.6
1,679,932 + +0.5
1,679,933 - +1.2
1,679,933 - +0.6
1,679,936 + +0.9
1,679,938 + +0.8
1,679,939 - -0.7
1,679,943 + -0.0
1,679,959 + -0.3
1,679,961 + -0.9
1,679,969 - -0.6
1,679,977 - -0.5
1,679,977 - -1.1
1,679,980 + -0.5
1,679,980 + +0.1
1,679,980 + -0.1
1,679,980 + -0.7
1,679,981 - +0.3
1,680,010 - -0.3
1,680,183 + +0.5
1,680,250 + CA264_07275 0.10 +0.7
1,680,309 + CA264_07275 0.19 -0.0
1,680,310 - CA264_07275 0.20 +1.0
1,680,310 - CA264_07275 0.20 -0.8
1,680,376 + CA264_07275 0.30 -0.3
1,680,377 - CA264_07275 0.30 -0.2
1,680,393 - CA264_07275 0.33 +0.3
1,680,440 - CA264_07275 0.40 -0.1
1,680,496 - CA264_07275 0.49 -0.6
1,680,522 + CA264_07275 0.53 +0.4
1,680,537 - CA264_07275 0.56 -0.2
1,680,541 + CA264_07275 0.56 +0.0
1,680,541 + CA264_07275 0.56 -0.3
1,680,541 + CA264_07275 0.56 +0.6
1,680,542 - CA264_07275 0.56 +1.1
1,680,553 + CA264_07275 0.58 +0.2
1,680,553 + CA264_07275 0.58 -0.3
1,680,554 - CA264_07275 0.58 +0.6
1,680,557 + CA264_07275 0.59 +1.5
1,680,557 + CA264_07275 0.59 +0.5
1,680,558 - CA264_07275 0.59 +0.3
1,680,647 - CA264_07275 0.73 -0.3
1,680,681 - CA264_07275 0.78 +1.5
1,680,696 + CA264_07275 0.81 -1.2
1,680,706 + CA264_07275 0.82 -0.0
1,680,727 + CA264_07275 0.86 -0.4
1,680,734 + CA264_07275 0.87 +0.9
1,680,734 + CA264_07275 0.87 +0.3
1,680,774 - -0.2
1,680,774 - -0.5
1,680,815 - +0.2
1,680,815 - +0.9
1,680,819 + +1.2
1,680,853 - +0.3
1,680,904 + CA264_07280 0.10 -0.7
1,680,904 + CA264_07280 0.10 -0.2
1,680,924 + CA264_07280 0.13 -0.2
1,680,924 + CA264_07280 0.13 +0.1
1,680,961 - CA264_07280 0.17 -0.1
1,680,991 + CA264_07280 0.20 +0.8
1,681,027 + CA264_07280 0.25 -0.0
1,681,054 - CA264_07280 0.28 +1.1
1,681,218 + CA264_07280 0.47 +0.7
1,681,218 + CA264_07280 0.47 +0.3
1,681,288 + CA264_07280 0.56 +0.6
1,681,289 - CA264_07280 0.56 -0.3
1,681,296 - CA264_07280 0.57 -0.0
1,681,296 - CA264_07280 0.57 -1.2
1,681,440 + CA264_07280 0.74 +0.9
1,681,441 - CA264_07280 0.74 +0.7
1,681,503 + CA264_07280 0.81 +0.6
1,681,506 + CA264_07280 0.81 +0.6
1,681,529 + CA264_07280 0.84 -0.7
1,681,577 + CA264_07280 0.90 -0.4
1,681,578 - CA264_07280 0.90 +0.4
1,681,594 + +0.5
1,681,644 + +1.2
1,681,645 - +0.0
1,681,655 + +1.8
1,681,676 + +0.6
1,681,707 + -0.2
1,681,708 - -0.9
1,681,714 - +0.4
1,681,771 - -0.3
1,681,772 + +1.0
1,681,773 - +0.9
1,681,773 - +0.1
1,681,780 + -0.1
1,681,786 - -0.0

Or see this region's nucleotide sequence