Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06480 and CA264_06485 are separated by 74 nucleotides CA264_06485 and CA264_06490 are separated by 37 nucleotides
CA264_06480: CA264_06480 - threonine aldolase, at 1,497,841 to 1,498,887
_06480
CA264_06485: CA264_06485 - Fe-S cluster assembly protein HesB, at 1,498,962 to 1,499,591
_06485
CA264_06490: CA264_06490 - DNA topoisomerase I, at 1,499,629 to 1,500,714
_06490
Position (kb)
1498
1499
1500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1498.047 kb on + strand, within CA264_06480 at 1498.076 kb on + strand, within CA264_06480 at 1498.076 kb on + strand, within CA264_06480 at 1498.173 kb on + strand, within CA264_06480 at 1498.218 kb on + strand, within CA264_06480 at 1498.295 kb on + strand, within CA264_06480 at 1498.322 kb on + strand, within CA264_06480 at 1498.322 kb on + strand, within CA264_06480 at 1498.323 kb on - strand, within CA264_06480 at 1498.323 kb on - strand, within CA264_06480 at 1498.323 kb on - strand, within CA264_06480 at 1498.396 kb on - strand, within CA264_06480 at 1498.409 kb on - strand, within CA264_06480 at 1498.415 kb on + strand, within CA264_06480 at 1498.415 kb on + strand, within CA264_06480 at 1498.415 kb on + strand, within CA264_06480 at 1498.415 kb on + strand, within CA264_06480 at 1498.416 kb on - strand, within CA264_06480 at 1498.417 kb on + strand, within CA264_06480 at 1498.426 kb on - strand, within CA264_06480 at 1498.455 kb on - strand, within CA264_06480 at 1498.482 kb on - strand, within CA264_06480 at 1498.576 kb on + strand, within CA264_06480 at 1498.577 kb on - strand, within CA264_06480 at 1498.596 kb on - strand, within CA264_06480 at 1498.661 kb on - strand, within CA264_06480 at 1498.661 kb on - strand, within CA264_06480 at 1498.664 kb on + strand, within CA264_06480 at 1498.664 kb on + strand, within CA264_06480 at 1498.665 kb on - strand, within CA264_06480 at 1498.665 kb on - strand, within CA264_06480 at 1498.665 kb on - strand, within CA264_06480 at 1498.686 kb on + strand, within CA264_06480 at 1498.764 kb on - strand, within CA264_06480 at 1498.764 kb on - strand, within CA264_06480 at 1498.764 kb on - strand, within CA264_06480 at 1498.794 kb on - strand at 1498.841 kb on + strand at 1499.026 kb on + strand, within CA264_06485 at 1499.033 kb on + strand, within CA264_06485 at 1499.036 kb on + strand, within CA264_06485 at 1499.081 kb on - strand, within CA264_06485 at 1499.083 kb on - strand, within CA264_06485 at 1499.102 kb on + strand, within CA264_06485 at 1499.102 kb on + strand, within CA264_06485 at 1499.103 kb on - strand, within CA264_06485 at 1499.156 kb on + strand, within CA264_06485 at 1499.179 kb on - strand, within CA264_06485 at 1499.197 kb on + strand, within CA264_06485 at 1499.201 kb on - strand, within CA264_06485 at 1499.201 kb on - strand, within CA264_06485 at 1499.236 kb on + strand, within CA264_06485 at 1499.257 kb on - strand, within CA264_06485 at 1499.259 kb on - strand, within CA264_06485 at 1499.264 kb on + strand, within CA264_06485 at 1499.365 kb on + strand, within CA264_06485 at 1499.404 kb on + strand, within CA264_06485 at 1499.437 kb on + strand, within CA264_06485 at 1499.466 kb on + strand, within CA264_06485 at 1499.466 kb on + strand, within CA264_06485 at 1499.495 kb on - strand, within CA264_06485 at 1499.495 kb on - strand, within CA264_06485 at 1499.540 kb on + strand at 1499.552 kb on + strand at 1499.553 kb on - strand at 1499.557 kb on - strand at 1499.557 kb on - strand at 1499.623 kb on - strand at 1499.623 kb on - strand at 1499.630 kb on + strand at 1499.630 kb on + strand at 1499.674 kb on + strand at 1499.697 kb on + strand at 1499.697 kb on + strand at 1499.742 kb on - strand, within CA264_06490 at 1499.763 kb on + strand, within CA264_06490 at 1499.788 kb on + strand, within CA264_06490 at 1499.788 kb on + strand, within CA264_06490 at 1499.789 kb on - strand, within CA264_06490 at 1499.789 kb on - strand, within CA264_06490 at 1499.793 kb on - strand, within CA264_06490 at 1499.793 kb on - strand, within CA264_06490 at 1499.795 kb on + strand, within CA264_06490 at 1499.796 kb on - strand, within CA264_06490 at 1499.811 kb on + strand, within CA264_06490 at 1499.860 kb on - strand, within CA264_06490 at 1499.959 kb on - strand, within CA264_06490 at 1499.988 kb on - strand, within CA264_06490 at 1499.988 kb on - strand, within CA264_06490 at 1499.994 kb on + strand, within CA264_06490 at 1499.995 kb on - strand, within CA264_06490 at 1500.010 kb on + strand, within CA264_06490 at 1500.010 kb on + strand, within CA264_06490 at 1500.011 kb on - strand, within CA264_06490 at 1500.041 kb on + strand, within CA264_06490 at 1500.042 kb on - strand, within CA264_06490 at 1500.042 kb on - strand, within CA264_06490 at 1500.050 kb on - strand, within CA264_06490 at 1500.145 kb on - strand, within CA264_06490 at 1500.151 kb on - strand, within CA264_06490 at 1500.201 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.390 kb on + strand, within CA264_06490 at 1500.423 kb on - strand, within CA264_06490 at 1500.496 kb on + strand, within CA264_06490 at 1500.497 kb on - strand, within CA264_06490 at 1500.580 kb on + strand, within CA264_06490 at 1500.587 kb on + strand, within CA264_06490
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 1,498,047 + CA264_06480 0.20 +0.7 1,498,076 + CA264_06480 0.22 +0.0 1,498,076 + CA264_06480 0.22 -1.2 1,498,173 + CA264_06480 0.32 +2.5 1,498,218 + CA264_06480 0.36 +0.4 1,498,295 + CA264_06480 0.43 -0.1 1,498,322 + CA264_06480 0.46 -1.0 1,498,322 + CA264_06480 0.46 +0.7 1,498,323 - CA264_06480 0.46 +0.9 1,498,323 - CA264_06480 0.46 +0.4 1,498,323 - CA264_06480 0.46 -0.4 1,498,396 - CA264_06480 0.53 -0.1 1,498,409 - CA264_06480 0.54 +0.4 1,498,415 + CA264_06480 0.55 +0.8 1,498,415 + CA264_06480 0.55 +0.5 1,498,415 + CA264_06480 0.55 -0.6 1,498,415 + CA264_06480 0.55 +0.1 1,498,416 - CA264_06480 0.55 -0.3 1,498,417 + CA264_06480 0.55 -1.2 1,498,426 - CA264_06480 0.56 +0.9 1,498,455 - CA264_06480 0.59 +1.0 1,498,482 - CA264_06480 0.61 -0.3 1,498,576 + CA264_06480 0.70 -0.2 1,498,577 - CA264_06480 0.70 -0.5 1,498,596 - CA264_06480 0.72 +0.0 1,498,661 - CA264_06480 0.78 -0.0 1,498,661 - CA264_06480 0.78 +0.5 1,498,664 + CA264_06480 0.79 -0.1 1,498,664 + CA264_06480 0.79 -0.0 1,498,665 - CA264_06480 0.79 +0.5 1,498,665 - CA264_06480 0.79 -0.4 1,498,665 - CA264_06480 0.79 +0.6 1,498,686 + CA264_06480 0.81 -0.6 1,498,764 - CA264_06480 0.88 -0.8 1,498,764 - CA264_06480 0.88 -0.2 1,498,764 - CA264_06480 0.88 -0.9 1,498,794 - -0.3 1,498,841 + -0.9 1,499,026 + CA264_06485 0.10 +0.5 1,499,033 + CA264_06485 0.11 -0.6 1,499,036 + CA264_06485 0.12 +0.1 1,499,081 - CA264_06485 0.19 -0.4 1,499,083 - CA264_06485 0.19 +0.2 1,499,102 + CA264_06485 0.22 -0.8 1,499,102 + CA264_06485 0.22 -0.0 1,499,103 - CA264_06485 0.22 -0.4 1,499,156 + CA264_06485 0.31 -0.4 1,499,179 - CA264_06485 0.34 -0.4 1,499,197 + CA264_06485 0.37 -0.5 1,499,201 - CA264_06485 0.38 +0.7 1,499,201 - CA264_06485 0.38 -0.3 1,499,236 + CA264_06485 0.43 +0.8 1,499,257 - CA264_06485 0.47 +0.5 1,499,259 - CA264_06485 0.47 -0.3 1,499,264 + CA264_06485 0.48 -0.4 1,499,365 + CA264_06485 0.64 -0.2 1,499,404 + CA264_06485 0.70 -0.1 1,499,437 + CA264_06485 0.75 -0.3 1,499,466 + CA264_06485 0.80 -0.8 1,499,466 + CA264_06485 0.80 -1.5 1,499,495 - CA264_06485 0.85 -0.7 1,499,495 - CA264_06485 0.85 -0.1 1,499,540 + -0.2 1,499,552 + +0.1 1,499,553 - -0.4 1,499,557 - -0.8 1,499,557 - +0.7 1,499,623 - -0.6 1,499,623 - -1.0 1,499,630 + +0.6 1,499,630 + -0.1 1,499,674 + +1.1 1,499,697 + +0.3 1,499,697 + -2.8 1,499,742 - CA264_06490 0.10 -0.1 1,499,763 + CA264_06490 0.12 -0.5 1,499,788 + CA264_06490 0.15 -1.0 1,499,788 + CA264_06490 0.15 +0.1 1,499,789 - CA264_06490 0.15 -0.6 1,499,789 - CA264_06490 0.15 -0.9 1,499,793 - CA264_06490 0.15 +1.1 1,499,793 - CA264_06490 0.15 +0.1 1,499,795 + CA264_06490 0.15 +2.5 1,499,796 - CA264_06490 0.15 -0.2 1,499,811 + CA264_06490 0.17 -1.1 1,499,860 - CA264_06490 0.21 -0.4 1,499,959 - CA264_06490 0.30 +0.6 1,499,988 - CA264_06490 0.33 +0.2 1,499,988 - CA264_06490 0.33 -0.5 1,499,994 + CA264_06490 0.34 -0.6 1,499,995 - CA264_06490 0.34 -0.9 1,500,010 + CA264_06490 0.35 -2.0 1,500,010 + CA264_06490 0.35 -0.2 1,500,011 - CA264_06490 0.35 +0.0 1,500,041 + CA264_06490 0.38 -0.2 1,500,042 - CA264_06490 0.38 -0.2 1,500,042 - CA264_06490 0.38 -1.7 1,500,050 - CA264_06490 0.39 -0.2 1,500,145 - CA264_06490 0.48 -0.5 1,500,151 - CA264_06490 0.48 +0.3 1,500,201 + CA264_06490 0.53 -0.1 1,500,318 + CA264_06490 0.63 -0.3 1,500,318 + CA264_06490 0.63 +0.1 1,500,318 + CA264_06490 0.63 -0.2 1,500,390 + CA264_06490 0.70 -0.1 1,500,423 - CA264_06490 0.73 -0.6 1,500,496 + CA264_06490 0.80 -0.4 1,500,497 - CA264_06490 0.80 +0.7 1,500,580 + CA264_06490 0.88 -0.2 1,500,587 + CA264_06490 0.88 -0.2
Or see this region's nucleotide sequence