Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06395

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06385 and CA264_06390 are separated by 25 nucleotidesCA264_06390 and CA264_06395 are separated by 154 nucleotidesCA264_06395 and CA264_06400 overlap by 8 nucleotidesCA264_06400 and CA264_06405 overlap by 17 nucleotides CA264_06385: CA264_06385 - tRNA-binding protein, at 1,484,249 to 1,484,584 _06385 CA264_06390: CA264_06390 - hypothetical protein, at 1,484,610 to 1,484,906 _06390 CA264_06395: CA264_06395 - DUF58 domain-containing protein, at 1,485,061 to 1,485,942 _06395 CA264_06400: CA264_06400 - hypothetical protein, at 1,485,935 to 1,486,846 _06400 CA264_06405: CA264_06405 - VWA domain-containing protein, at 1,486,830 to 1,487,879 _06405 Position (kb) 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1484.082 kb on - strandat 1484.098 kb on + strandat 1484.099 kb on - strandat 1484.106 kb on + strandat 1484.106 kb on + strandat 1484.107 kb on - strandat 1484.107 kb on - strandat 1484.109 kb on - strandat 1484.184 kb on + strandat 1484.216 kb on + strandat 1484.216 kb on + strandat 1484.216 kb on + strandat 1484.217 kb on - strandat 1484.217 kb on - strandat 1484.219 kb on - strandat 1484.219 kb on - strandat 1484.219 kb on - strandat 1484.222 kb on + strandat 1484.222 kb on + strandat 1484.222 kb on + strandat 1484.223 kb on - strandat 1484.304 kb on + strand, within CA264_06385at 1484.304 kb on + strand, within CA264_06385at 1484.305 kb on - strand, within CA264_06385at 1484.307 kb on + strand, within CA264_06385at 1484.307 kb on + strand, within CA264_06385at 1484.347 kb on + strand, within CA264_06385at 1484.347 kb on + strand, within CA264_06385at 1484.348 kb on - strand, within CA264_06385at 1484.348 kb on - strand, within CA264_06385at 1484.352 kb on + strand, within CA264_06385at 1484.352 kb on + strand, within CA264_06385at 1484.353 kb on - strand, within CA264_06385at 1484.358 kb on + strand, within CA264_06385at 1484.359 kb on - strand, within CA264_06385at 1484.412 kb on - strand, within CA264_06385at 1484.451 kb on + strand, within CA264_06385at 1484.497 kb on - strand, within CA264_06385at 1484.530 kb on + strand, within CA264_06385at 1484.531 kb on - strand, within CA264_06385at 1484.531 kb on - strand, within CA264_06385at 1484.535 kb on + strand, within CA264_06385at 1484.535 kb on + strand, within CA264_06385at 1484.580 kb on + strandat 1484.581 kb on - strandat 1484.581 kb on - strandat 1484.581 kb on - strandat 1484.582 kb on + strandat 1484.612 kb on - strandat 1484.612 kb on - strandat 1484.612 kb on - strandat 1484.616 kb on + strandat 1484.617 kb on - strandat 1484.617 kb on - strandat 1485.022 kb on - strandat 1485.028 kb on + strandat 1485.074 kb on + strandat 1485.098 kb on + strandat 1485.099 kb on - strandat 1485.105 kb on - strandat 1485.197 kb on - strand, within CA264_06395at 1485.216 kb on + strand, within CA264_06395at 1485.426 kb on + strand, within CA264_06395at 1485.438 kb on + strand, within CA264_06395at 1485.448 kb on + strand, within CA264_06395at 1485.448 kb on + strand, within CA264_06395at 1485.449 kb on - strand, within CA264_06395at 1485.482 kb on - strand, within CA264_06395at 1485.491 kb on + strand, within CA264_06395at 1485.491 kb on + strand, within CA264_06395at 1485.492 kb on - strand, within CA264_06395at 1485.492 kb on - strand, within CA264_06395at 1485.494 kb on - strand, within CA264_06395at 1485.548 kb on + strand, within CA264_06395at 1485.549 kb on - strand, within CA264_06395at 1485.606 kb on + strand, within CA264_06395at 1485.787 kb on + strand, within CA264_06395at 1485.829 kb on - strand, within CA264_06395at 1485.829 kb on - strand, within CA264_06395at 1485.841 kb on + strand, within CA264_06395at 1485.841 kb on + strand, within CA264_06395at 1485.842 kb on - strand, within CA264_06395at 1485.853 kb on + strand, within CA264_06395at 1485.880 kb on + strandat 1485.880 kb on + strandat 1485.919 kb on - strandat 1485.941 kb on - strandat 1486.000 kb on - strandat 1486.000 kb on - strandat 1486.035 kb on + strand, within CA264_06400at 1486.036 kb on - strand, within CA264_06400at 1486.059 kb on - strand, within CA264_06400at 1486.060 kb on + strand, within CA264_06400at 1486.060 kb on + strand, within CA264_06400at 1486.061 kb on - strand, within CA264_06400at 1486.061 kb on - strand, within CA264_06400at 1486.098 kb on + strand, within CA264_06400at 1486.199 kb on + strand, within CA264_06400at 1486.254 kb on - strand, within CA264_06400at 1486.351 kb on - strand, within CA264_06400at 1486.364 kb on - strand, within CA264_06400at 1486.391 kb on - strand, within CA264_06400at 1486.455 kb on + strand, within CA264_06400at 1486.481 kb on + strand, within CA264_06400at 1486.482 kb on - strand, within CA264_06400at 1486.514 kb on + strand, within CA264_06400at 1486.577 kb on - strand, within CA264_06400at 1486.578 kb on + strand, within CA264_06400at 1486.579 kb on - strand, within CA264_06400at 1486.670 kb on + strand, within CA264_06400at 1486.670 kb on + strand, within CA264_06400at 1486.671 kb on - strand, within CA264_06400at 1486.706 kb on - strand, within CA264_06400at 1486.706 kb on - strand, within CA264_06400at 1486.706 kb on - strand, within CA264_06400at 1486.724 kb on + strand, within CA264_06400at 1486.724 kb on + strand, within CA264_06400at 1486.725 kb on - strand, within CA264_06400at 1486.725 kb on - strand, within CA264_06400at 1486.765 kb on - strandat 1486.771 kb on - strandat 1486.821 kb on + strandat 1486.822 kb on - strandat 1486.822 kb on - strandat 1486.834 kb on + strandat 1486.840 kb on + strandat 1486.840 kb on + strandat 1486.840 kb on + strandat 1486.841 kb on - strandat 1486.841 kb on - strandat 1486.880 kb on + strandat 1486.884 kb on + strandat 1486.885 kb on - strandat 1486.914 kb on + strandat 1486.929 kb on + strandat 1486.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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1,484,082 - -1.3
1,484,098 + -0.8
1,484,099 - +1.7
1,484,106 + -1.9
1,484,106 + -0.9
1,484,107 - -0.9
1,484,107 - -0.8
1,484,109 - -0.4
1,484,184 + +0.0
1,484,216 + -0.2
1,484,216 + +1.3
1,484,216 + -0.5
1,484,217 - -0.6
1,484,217 - +0.0
1,484,219 - -1.8
1,484,219 - -0.7
1,484,219 - +0.2
1,484,222 + -0.2
1,484,222 + +1.0
1,484,222 + +0.2
1,484,223 - -0.7
1,484,304 + CA264_06385 0.16 -0.8
1,484,304 + CA264_06385 0.16 -0.1
1,484,305 - CA264_06385 0.17 -1.7
1,484,307 + CA264_06385 0.17 +0.4
1,484,307 + CA264_06385 0.17 +0.2
1,484,347 + CA264_06385 0.29 -0.1
1,484,347 + CA264_06385 0.29 -1.0
1,484,348 - CA264_06385 0.29 -1.6
1,484,348 - CA264_06385 0.29 -0.0
1,484,352 + CA264_06385 0.31 -0.3
1,484,352 + CA264_06385 0.31 -0.1
1,484,353 - CA264_06385 0.31 -1.3
1,484,358 + CA264_06385 0.32 -1.1
1,484,359 - CA264_06385 0.33 -0.3
1,484,412 - CA264_06385 0.49 +0.3
1,484,451 + CA264_06385 0.60 -1.1
1,484,497 - CA264_06385 0.74 -0.2
1,484,530 + CA264_06385 0.84 -0.5
1,484,531 - CA264_06385 0.84 -0.4
1,484,531 - CA264_06385 0.84 -0.1
1,484,535 + CA264_06385 0.85 -0.3
1,484,535 + CA264_06385 0.85 +0.2
1,484,580 + -1.2
1,484,581 - -0.6
1,484,581 - -0.4
1,484,581 - +0.7
1,484,582 + +0.2
1,484,612 - +1.0
1,484,612 - +1.3
1,484,612 - -1.9
1,484,616 + +0.4
1,484,617 - -1.1
1,484,617 - -0.2
1,485,022 - -0.9
1,485,028 + -0.5
1,485,074 + -0.3
1,485,098 + +0.3
1,485,099 - -0.5
1,485,105 - +0.5
1,485,197 - CA264_06395 0.15 +0.7
1,485,216 + CA264_06395 0.18 +0.3
1,485,426 + CA264_06395 0.41 +0.4
1,485,438 + CA264_06395 0.43 -0.9
1,485,448 + CA264_06395 0.44 +0.5
1,485,448 + CA264_06395 0.44 +0.5
1,485,449 - CA264_06395 0.44 +0.5
1,485,482 - CA264_06395 0.48 +0.4
1,485,491 + CA264_06395 0.49 +1.0
1,485,491 + CA264_06395 0.49 +0.0
1,485,492 - CA264_06395 0.49 +0.7
1,485,492 - CA264_06395 0.49 -0.1
1,485,494 - CA264_06395 0.49 +0.4
1,485,548 + CA264_06395 0.55 +0.5
1,485,549 - CA264_06395 0.55 -0.1
1,485,606 + CA264_06395 0.62 +1.5
1,485,787 + CA264_06395 0.82 +0.6
1,485,829 - CA264_06395 0.87 -2.2
1,485,829 - CA264_06395 0.87 +0.7
1,485,841 + CA264_06395 0.88 +0.9
1,485,841 + CA264_06395 0.88 +0.9
1,485,842 - CA264_06395 0.89 +0.9
1,485,853 + CA264_06395 0.90 +0.5
1,485,880 + -0.0
1,485,880 + +0.5
1,485,919 - -1.3
1,485,941 - -0.1
1,486,000 - -0.7
1,486,000 - -0.1
1,486,035 + CA264_06400 0.11 +0.5
1,486,036 - CA264_06400 0.11 +0.9
1,486,059 - CA264_06400 0.14 -0.2
1,486,060 + CA264_06400 0.14 +1.3
1,486,060 + CA264_06400 0.14 -0.5
1,486,061 - CA264_06400 0.14 +0.3
1,486,061 - CA264_06400 0.14 +1.3
1,486,098 + CA264_06400 0.18 -0.8
1,486,199 + CA264_06400 0.29 +0.2
1,486,254 - CA264_06400 0.35 +0.6
1,486,351 - CA264_06400 0.46 +0.8
1,486,364 - CA264_06400 0.47 +0.1
1,486,391 - CA264_06400 0.50 +1.0
1,486,455 + CA264_06400 0.57 +0.4
1,486,481 + CA264_06400 0.60 +0.3
1,486,482 - CA264_06400 0.60 +0.3
1,486,514 + CA264_06400 0.63 +0.5
1,486,577 - CA264_06400 0.70 +0.2
1,486,578 + CA264_06400 0.71 +0.5
1,486,579 - CA264_06400 0.71 +1.0
1,486,670 + CA264_06400 0.81 +0.3
1,486,670 + CA264_06400 0.81 +0.7
1,486,671 - CA264_06400 0.81 +0.1
1,486,706 - CA264_06400 0.85 +0.6
1,486,706 - CA264_06400 0.85 +0.2
1,486,706 - CA264_06400 0.85 -0.1
1,486,724 + CA264_06400 0.87 +0.5
1,486,724 + CA264_06400 0.87 +0.7
1,486,725 - CA264_06400 0.87 +0.5
1,486,725 - CA264_06400 0.87 +0.9
1,486,765 - +0.3
1,486,771 - +0.9
1,486,821 + +0.0
1,486,822 - +0.9
1,486,822 - +0.6
1,486,834 + +0.1
1,486,840 + +0.7
1,486,840 + -0.4
1,486,840 + +0.1
1,486,841 - +0.3
1,486,841 - -0.2
1,486,880 + +0.6
1,486,884 + +0.1
1,486,885 - +1.0
1,486,914 + +0.3
1,486,929 + +0.3
1,486,930 + +0.1

Or see this region's nucleotide sequence