Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06035

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06030 and CA264_06035 are separated by 82 nucleotidesCA264_06035 and CA264_06040 are separated by 437 nucleotides CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085 _06030 CA264_06035: CA264_06035 - hypothetical protein, at 1,408,168 to 1,408,626 _06035 CA264_06040: CA264_06040 - hypothetical protein, at 1,409,064 to 1,411,847 _06040 Position (kb) 1408 1409Strain fitness (log2 ratio) -1 0 1 2at 1407.200 kb on + strandat 1407.201 kb on - strandat 1407.206 kb on + strandat 1407.206 kb on + strandat 1407.207 kb on - strandat 1407.224 kb on - strandat 1407.291 kb on + strandat 1407.291 kb on + strandat 1407.353 kb on + strand, within CA264_06030at 1407.353 kb on + strand, within CA264_06030at 1407.354 kb on - strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.692 kb on - strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.935 kb on - strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030at 1408.094 kb on + strandat 1408.095 kb on - strandat 1408.104 kb on - strandat 1408.169 kb on + strandat 1408.186 kb on + strandat 1408.192 kb on + strandat 1408.223 kb on - strand, within CA264_06035at 1408.271 kb on + strand, within CA264_06035at 1408.271 kb on + strand, within CA264_06035at 1408.277 kb on - strand, within CA264_06035at 1408.462 kb on + strand, within CA264_06035at 1408.462 kb on + strand, within CA264_06035at 1408.543 kb on + strand, within CA264_06035at 1408.543 kb on + strand, within CA264_06035at 1408.544 kb on - strand, within CA264_06035at 1408.684 kb on + strandat 1408.722 kb on + strandat 1408.722 kb on + strandat 1408.723 kb on - strandat 1408.723 kb on - strandat 1408.800 kb on - strandat 1408.805 kb on + strandat 1408.829 kb on - strandat 1408.853 kb on + strandat 1408.853 kb on + strandat 1408.880 kb on - strandat 1408.939 kb on - strandat 1408.995 kb on - strandat 1409.041 kb on + strandat 1409.046 kb on + strandat 1409.046 kb on + strandat 1409.048 kb on + strandat 1409.163 kb on - strandat 1409.164 kb on - strandat 1409.230 kb on + strandat 1409.280 kb on + strandat 1409.281 kb on - strandat 1409.281 kb on - strandat 1409.281 kb on - strandat 1409.281 kb on - strandat 1409.283 kb on - strandat 1409.298 kb on + strandat 1409.524 kb on + strand, within CA264_06040at 1409.545 kb on + strand, within CA264_06040at 1409.545 kb on + strand, within CA264_06040at 1409.546 kb on - strand, within CA264_06040at 1409.546 kb on - strand, within CA264_06040at 1409.546 kb on - strand, within CA264_06040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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1,407,200 + +0.3
1,407,201 - +0.5
1,407,206 + +1.2
1,407,206 + +0.9
1,407,207 - +0.3
1,407,224 - +0.3
1,407,291 + -0.1
1,407,291 + -0.3
1,407,353 + CA264_06030 0.17 +1.3
1,407,353 + CA264_06030 0.17 +0.2
1,407,354 - CA264_06030 0.17 +1.6
1,407,691 + CA264_06030 0.55 +0.2
1,407,691 + CA264_06030 0.55 -0.3
1,407,691 + CA264_06030 0.55 +0.2
1,407,692 - CA264_06030 0.55 +0.4
1,407,693 + CA264_06030 0.55 +1.2
1,407,693 + CA264_06030 0.55 -0.1
1,407,694 - CA264_06030 0.55 -0.7
1,407,694 - CA264_06030 0.55 +0.0
1,407,935 - CA264_06030 0.83 +0.7
1,407,972 + CA264_06030 0.87 +0.7
1,407,972 + CA264_06030 0.87 -0.5
1,408,094 + -0.6
1,408,095 - -0.2
1,408,104 - -0.1
1,408,169 + +0.1
1,408,186 + -1.3
1,408,192 + -0.4
1,408,223 - CA264_06035 0.12 -0.0
1,408,271 + CA264_06035 0.22 -0.4
1,408,271 + CA264_06035 0.22 -0.1
1,408,277 - CA264_06035 0.24 -0.1
1,408,462 + CA264_06035 0.64 -0.2
1,408,462 + CA264_06035 0.64 -0.2
1,408,543 + CA264_06035 0.82 -0.4
1,408,543 + CA264_06035 0.82 -0.1
1,408,544 - CA264_06035 0.82 -0.6
1,408,684 + +1.6
1,408,722 + -0.3
1,408,722 + +0.1
1,408,723 - +0.2
1,408,723 - +0.2
1,408,800 - +0.2
1,408,805 + +0.2
1,408,829 - -1.1
1,408,853 + -0.3
1,408,853 + +0.1
1,408,880 - +1.0
1,408,939 - +0.9
1,408,995 - +1.1
1,409,041 + -1.6
1,409,046 + +0.1
1,409,046 + +0.3
1,409,048 + +0.9
1,409,163 - +0.4
1,409,164 - +1.1
1,409,230 + -0.1
1,409,280 + +0.4
1,409,281 - +1.5
1,409,281 - +0.1
1,409,281 - -0.4
1,409,281 - +0.7
1,409,283 - +0.9
1,409,298 + -0.3
1,409,524 + CA264_06040 0.17 +0.8
1,409,545 + CA264_06040 0.17 +0.8
1,409,545 + CA264_06040 0.17 -0.1
1,409,546 - CA264_06040 0.17 +0.1
1,409,546 - CA264_06040 0.17 +2.5
1,409,546 - CA264_06040 0.17 +0.2

Or see this region's nucleotide sequence