Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06030 and CA264_06035 are separated by 82 nucleotides CA264_06035 and CA264_06040 are separated by 437 nucleotides
CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085
_06030
CA264_06035: CA264_06035 - hypothetical protein, at 1,408,168 to 1,408,626
_06035
CA264_06040: CA264_06040 - hypothetical protein, at 1,409,064 to 1,411,847
_06040
Position (kb)
1408
1409 Strain fitness (log2 ratio)
-1
0
1
2 at 1407.200 kb on + strand at 1407.201 kb on - strand at 1407.206 kb on + strand at 1407.206 kb on + strand at 1407.207 kb on - strand at 1407.224 kb on - strand at 1407.291 kb on + strand at 1407.291 kb on + strand at 1407.353 kb on + strand, within CA264_06030 at 1407.353 kb on + strand, within CA264_06030 at 1407.354 kb on - strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.692 kb on - strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.935 kb on - strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1408.094 kb on + strand at 1408.095 kb on - strand at 1408.104 kb on - strand at 1408.169 kb on + strand at 1408.186 kb on + strand at 1408.192 kb on + strand at 1408.223 kb on - strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.277 kb on - strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.544 kb on - strand, within CA264_06035 at 1408.684 kb on + strand at 1408.722 kb on + strand at 1408.722 kb on + strand at 1408.723 kb on - strand at 1408.723 kb on - strand at 1408.800 kb on - strand at 1408.805 kb on + strand at 1408.829 kb on - strand at 1408.853 kb on + strand at 1408.853 kb on + strand at 1408.880 kb on - strand at 1408.939 kb on - strand at 1408.995 kb on - strand at 1409.041 kb on + strand at 1409.046 kb on + strand at 1409.046 kb on + strand at 1409.048 kb on + strand at 1409.163 kb on - strand at 1409.164 kb on - strand at 1409.230 kb on + strand at 1409.280 kb on + strand at 1409.281 kb on - strand at 1409.281 kb on - strand at 1409.281 kb on - strand at 1409.281 kb on - strand at 1409.283 kb on - strand at 1409.298 kb on + strand at 1409.524 kb on + strand, within CA264_06040 at 1409.545 kb on + strand, within CA264_06040 at 1409.545 kb on + strand, within CA264_06040 at 1409.546 kb on - strand, within CA264_06040 at 1409.546 kb on - strand, within CA264_06040 at 1409.546 kb on - strand, within CA264_06040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 1,407,200 + +0.3 1,407,201 - +0.5 1,407,206 + +1.2 1,407,206 + +0.9 1,407,207 - +0.3 1,407,224 - +0.3 1,407,291 + -0.1 1,407,291 + -0.3 1,407,353 + CA264_06030 0.17 +1.3 1,407,353 + CA264_06030 0.17 +0.2 1,407,354 - CA264_06030 0.17 +1.6 1,407,691 + CA264_06030 0.55 +0.2 1,407,691 + CA264_06030 0.55 -0.3 1,407,691 + CA264_06030 0.55 +0.2 1,407,692 - CA264_06030 0.55 +0.4 1,407,693 + CA264_06030 0.55 +1.2 1,407,693 + CA264_06030 0.55 -0.1 1,407,694 - CA264_06030 0.55 -0.7 1,407,694 - CA264_06030 0.55 +0.0 1,407,935 - CA264_06030 0.83 +0.7 1,407,972 + CA264_06030 0.87 +0.7 1,407,972 + CA264_06030 0.87 -0.5 1,408,094 + -0.6 1,408,095 - -0.2 1,408,104 - -0.1 1,408,169 + +0.1 1,408,186 + -1.3 1,408,192 + -0.4 1,408,223 - CA264_06035 0.12 -0.0 1,408,271 + CA264_06035 0.22 -0.4 1,408,271 + CA264_06035 0.22 -0.1 1,408,277 - CA264_06035 0.24 -0.1 1,408,462 + CA264_06035 0.64 -0.2 1,408,462 + CA264_06035 0.64 -0.2 1,408,543 + CA264_06035 0.82 -0.4 1,408,543 + CA264_06035 0.82 -0.1 1,408,544 - CA264_06035 0.82 -0.6 1,408,684 + +1.6 1,408,722 + -0.3 1,408,722 + +0.1 1,408,723 - +0.2 1,408,723 - +0.2 1,408,800 - +0.2 1,408,805 + +0.2 1,408,829 - -1.1 1,408,853 + -0.3 1,408,853 + +0.1 1,408,880 - +1.0 1,408,939 - +0.9 1,408,995 - +1.1 1,409,041 + -1.6 1,409,046 + +0.1 1,409,046 + +0.3 1,409,048 + +0.9 1,409,163 - +0.4 1,409,164 - +1.1 1,409,230 + -0.1 1,409,280 + +0.4 1,409,281 - +1.5 1,409,281 - +0.1 1,409,281 - -0.4 1,409,281 - +0.7 1,409,283 - +0.9 1,409,298 + -0.3 1,409,524 + CA264_06040 0.17 +0.8 1,409,545 + CA264_06040 0.17 +0.8 1,409,545 + CA264_06040 0.17 -0.1 1,409,546 - CA264_06040 0.17 +0.1 1,409,546 - CA264_06040 0.17 +2.5 1,409,546 - CA264_06040 0.17 +0.2
Or see this region's nucleotide sequence