Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05010

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05005 and CA264_05010 are separated by 69 nucleotidesCA264_05010 and CA264_05015 overlap by 2 nucleotidesCA264_05015 and CA264_05020 are separated by 3 nucleotidesCA264_05020 and CA264_05025 are separated by 124 nucleotides CA264_05005: CA264_05005 - colicin receptor, at 1,161,370 to 1,163,796 _05005 CA264_05010: CA264_05010 - hypothetical protein, at 1,163,866 to 1,164,732 _05010 CA264_05015: CA264_05015 - hypothetical protein, at 1,164,731 to 1,164,955 _05015 CA264_05020: CA264_05020 - hypothetical protein, at 1,164,959 to 1,165,408 _05020 CA264_05025: CA264_05025 - ATP phosphoribosyltransferase, at 1,165,533 to 1,166,384 _05025 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1162.883 kb on - strand, within CA264_05005at 1162.910 kb on - strand, within CA264_05005at 1162.940 kb on + strand, within CA264_05005at 1162.940 kb on + strand, within CA264_05005at 1162.946 kb on - strand, within CA264_05005at 1162.946 kb on - strand, within CA264_05005at 1162.954 kb on - strand, within CA264_05005at 1163.005 kb on + strand, within CA264_05005at 1163.052 kb on + strand, within CA264_05005at 1163.065 kb on - strand, within CA264_05005at 1163.104 kb on + strand, within CA264_05005at 1163.153 kb on - strand, within CA264_05005at 1163.155 kb on + strand, within CA264_05005at 1163.155 kb on + strand, within CA264_05005at 1163.156 kb on - strand, within CA264_05005at 1163.209 kb on + strand, within CA264_05005at 1163.212 kb on + strand, within CA264_05005at 1163.213 kb on - strand, within CA264_05005at 1163.213 kb on - strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.237 kb on - strand, within CA264_05005at 1163.237 kb on - strand, within CA264_05005at 1163.395 kb on + strand, within CA264_05005at 1163.479 kb on + strand, within CA264_05005at 1163.480 kb on - strand, within CA264_05005at 1163.480 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.495 kb on - strand, within CA264_05005at 1163.563 kb on + strandat 1163.563 kb on + strandat 1163.563 kb on + strandat 1163.564 kb on - strandat 1163.565 kb on + strandat 1163.596 kb on - strandat 1163.703 kb on + strandat 1163.703 kb on + strandat 1163.704 kb on - strandat 1163.704 kb on - strandat 1163.704 kb on - strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.708 kb on - strandat 1163.731 kb on - strandat 1163.735 kb on - strandat 1163.735 kb on - strandat 1163.859 kb on - strandat 1163.916 kb on - strandat 1163.922 kb on + strandat 1163.922 kb on + strandat 1163.987 kb on + strand, within CA264_05010at 1163.988 kb on - strand, within CA264_05010at 1163.999 kb on + strand, within CA264_05010at 1163.999 kb on + strand, within CA264_05010at 1164.000 kb on - strand, within CA264_05010at 1164.032 kb on + strand, within CA264_05010at 1164.061 kb on - strand, within CA264_05010at 1164.063 kb on + strand, within CA264_05010at 1164.110 kb on + strand, within CA264_05010at 1164.110 kb on + strand, within CA264_05010at 1164.111 kb on - strand, within CA264_05010at 1164.134 kb on + strand, within CA264_05010at 1164.135 kb on - strand, within CA264_05010at 1164.135 kb on - strand, within CA264_05010at 1164.166 kb on + strand, within CA264_05010at 1164.167 kb on - strand, within CA264_05010at 1164.167 kb on - strand, within CA264_05010at 1164.356 kb on + strand, within CA264_05010at 1164.430 kb on - strand, within CA264_05010at 1164.440 kb on + strand, within CA264_05010at 1164.441 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.587 kb on + strand, within CA264_05010at 1164.597 kb on + strand, within CA264_05010at 1164.764 kb on - strandat 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.772 kb on - strand, within CA264_05015at 1165.073 kb on + strand, within CA264_05020at 1165.075 kb on + strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.078 kb on + strand, within CA264_05020at 1165.165 kb on + strand, within CA264_05020at 1165.184 kb on - strand, within CA264_05020at 1165.231 kb on + strand, within CA264_05020at 1165.231 kb on + strand, within CA264_05020at 1165.250 kb on + strand, within CA264_05020at 1165.252 kb on + strand, within CA264_05020at 1165.262 kb on + strand, within CA264_05020at 1165.263 kb on - strand, within CA264_05020at 1165.268 kb on + strand, within CA264_05020at 1165.269 kb on - strand, within CA264_05020at 1165.269 kb on - strand, within CA264_05020at 1165.282 kb on + strand, within CA264_05020at 1165.308 kb on + strand, within CA264_05020at 1165.317 kb on - strand, within CA264_05020at 1165.337 kb on + strand, within CA264_05020at 1165.338 kb on - strand, within CA264_05020at 1165.399 kb on + strandat 1165.416 kb on - strandat 1165.424 kb on + strandat 1165.425 kb on - strandat 1165.431 kb on - strandat 1165.431 kb on - strandat 1165.435 kb on + strandat 1165.435 kb on + strandat 1165.435 kb on + strandat 1165.497 kb on - strandat 1165.499 kb on + strandat 1165.511 kb on + strandat 1165.516 kb on + strandat 1165.516 kb on + strandat 1165.525 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.538 kb on - strandat 1165.543 kb on + strandat 1165.543 kb on + strandat 1165.544 kb on - strandat 1165.544 kb on - strandat 1165.604 kb on + strandat 1165.616 kb on - strandat 1165.616 kb on - strandat 1165.633 kb on + strand, within CA264_05025

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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1,162,883 - CA264_05005 0.62 +0.6
1,162,910 - CA264_05005 0.63 +0.8
1,162,940 + CA264_05005 0.65 -0.5
1,162,940 + CA264_05005 0.65 -0.8
1,162,946 - CA264_05005 0.65 -0.6
1,162,946 - CA264_05005 0.65 +0.5
1,162,954 - CA264_05005 0.65 -1.3
1,163,005 + CA264_05005 0.67 -0.1
1,163,052 + CA264_05005 0.69 +0.1
1,163,065 - CA264_05005 0.70 -0.1
1,163,104 + CA264_05005 0.71 +1.3
1,163,153 - CA264_05005 0.73 -0.2
1,163,155 + CA264_05005 0.74 +0.9
1,163,155 + CA264_05005 0.74 -0.2
1,163,156 - CA264_05005 0.74 +0.7
1,163,209 + CA264_05005 0.76 +0.1
1,163,212 + CA264_05005 0.76 +0.3
1,163,213 - CA264_05005 0.76 -0.2
1,163,213 - CA264_05005 0.76 +0.3
1,163,236 + CA264_05005 0.77 +1.6
1,163,236 + CA264_05005 0.77 -0.9
1,163,236 + CA264_05005 0.77 -0.9
1,163,236 + CA264_05005 0.77 -0.3
1,163,237 - CA264_05005 0.77 +0.3
1,163,237 - CA264_05005 0.77 +1.1
1,163,395 + CA264_05005 0.83 +0.5
1,163,479 + CA264_05005 0.87 -0.6
1,163,480 - CA264_05005 0.87 +0.2
1,163,480 - CA264_05005 0.87 +0.9
1,163,490 - CA264_05005 0.87 +1.1
1,163,490 - CA264_05005 0.87 -0.2
1,163,490 - CA264_05005 0.87 -0.7
1,163,495 - CA264_05005 0.88 -0.8
1,163,563 + +0.6
1,163,563 + -0.1
1,163,563 + -0.4
1,163,564 - -0.6
1,163,565 + -0.5
1,163,596 - +0.6
1,163,703 + +0.4
1,163,703 + +0.1
1,163,704 - +0.5
1,163,704 - +0.7
1,163,704 - -0.0
1,163,707 + +0.5
1,163,707 + +0.4
1,163,707 + +0.4
1,163,707 + -0.4
1,163,707 + -1.2
1,163,708 - -0.9
1,163,731 - +0.5
1,163,735 - -0.7
1,163,735 - +1.0
1,163,859 - -0.1
1,163,916 - -0.1
1,163,922 + -1.1
1,163,922 + +2.8
1,163,987 + CA264_05010 0.14 -0.1
1,163,988 - CA264_05010 0.14 +0.6
1,163,999 + CA264_05010 0.15 +0.5
1,163,999 + CA264_05010 0.15 +2.6
1,164,000 - CA264_05010 0.15 -0.4
1,164,032 + CA264_05010 0.19 +0.5
1,164,061 - CA264_05010 0.22 +0.6
1,164,063 + CA264_05010 0.23 +0.2
1,164,110 + CA264_05010 0.28 -0.1
1,164,110 + CA264_05010 0.28 +0.2
1,164,111 - CA264_05010 0.28 -0.2
1,164,134 + CA264_05010 0.31 +1.1
1,164,135 - CA264_05010 0.31 +0.6
1,164,135 - CA264_05010 0.31 -0.2
1,164,166 + CA264_05010 0.35 +0.1
1,164,167 - CA264_05010 0.35 +0.3
1,164,167 - CA264_05010 0.35 +0.5
1,164,356 + CA264_05010 0.57 +0.3
1,164,430 - CA264_05010 0.65 +0.5
1,164,440 + CA264_05010 0.66 -0.2
1,164,441 - CA264_05010 0.66 +0.9
1,164,476 - CA264_05010 0.70 -0.4
1,164,476 - CA264_05010 0.70 +1.1
1,164,476 - CA264_05010 0.70 +0.8
1,164,587 + CA264_05010 0.83 +0.6
1,164,597 + CA264_05010 0.84 +0.6
1,164,764 - +1.0
1,164,764 - CA264_05015 0.15 -0.8
1,164,764 - CA264_05015 0.15 -1.1
1,164,764 - CA264_05015 0.15 -0.1
1,164,771 + CA264_05015 0.18 +0.0
1,164,771 + CA264_05015 0.18 -0.4
1,164,772 - CA264_05015 0.18 +0.5
1,165,073 + CA264_05020 0.25 +0.8
1,165,075 + CA264_05020 0.26 -0.1
1,165,076 - CA264_05020 0.26 +0.1
1,165,076 - CA264_05020 0.26 +0.2
1,165,076 - CA264_05020 0.26 -1.4
1,165,078 + CA264_05020 0.26 +0.5
1,165,165 + CA264_05020 0.46 -0.2
1,165,184 - CA264_05020 0.50 -0.5
1,165,231 + CA264_05020 0.60 +0.3
1,165,231 + CA264_05020 0.60 +0.1
1,165,250 + CA264_05020 0.65 -1.2
1,165,252 + CA264_05020 0.65 -0.3
1,165,262 + CA264_05020 0.67 -0.3
1,165,263 - CA264_05020 0.68 -0.7
1,165,268 + CA264_05020 0.69 -2.1
1,165,269 - CA264_05020 0.69 +0.3
1,165,269 - CA264_05020 0.69 -0.3
1,165,282 + CA264_05020 0.72 +0.3
1,165,308 + CA264_05020 0.78 -0.9
1,165,317 - CA264_05020 0.80 -0.5
1,165,337 + CA264_05020 0.84 +1.0
1,165,338 - CA264_05020 0.84 -0.3
1,165,399 + +0.9
1,165,416 - -0.7
1,165,424 + -1.4
1,165,425 - -0.1
1,165,431 - +0.6
1,165,431 - -1.8
1,165,435 + +0.4
1,165,435 + -0.4
1,165,435 + -0.4
1,165,497 - -0.5
1,165,499 + +0.6
1,165,511 + -0.3
1,165,516 + -0.4
1,165,516 + +0.2
1,165,525 + -1.3
1,165,529 + -0.3
1,165,529 + -0.6
1,165,529 + -0.1
1,165,529 + -0.4
1,165,538 - -0.6
1,165,543 + -0.8
1,165,543 + -0.2
1,165,544 - -0.5
1,165,544 - -0.5
1,165,604 + -1.7
1,165,616 - -0.4
1,165,616 - -0.2
1,165,633 + CA264_05025 0.12 -0.4

Or see this region's nucleotide sequence