Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04640

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04635 and CA264_04640 overlap by 17 nucleotidesCA264_04640 and CA264_04645 are separated by 2 nucleotidesCA264_04645 and CA264_04650 are separated by 0 nucleotides CA264_04635: CA264_04635 - riboflavin biosynthesis protein RibF, at 1,072,938 to 1,073,870 _04635 CA264_04640: CA264_04640 - tRNA pseudouridine(55) synthase, at 1,073,854 to 1,074,552 _04640 CA264_04645: CA264_04645 - UDP-diphosphatase, at 1,074,555 to 1,075,388 _04645 CA264_04650: CA264_04650 - hypothetical protein, at 1,075,389 to 1,075,607 _04650 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1072.924 kb on + strandat 1072.925 kb on - strandat 1072.940 kb on - strandat 1073.850 kb on + strandat 1073.862 kb on + strandat 1073.862 kb on + strandat 1073.937 kb on + strand, within CA264_04640at 1073.937 kb on + strand, within CA264_04640at 1073.937 kb on + strand, within CA264_04640at 1073.937 kb on + strand, within CA264_04640at 1073.938 kb on - strand, within CA264_04640at 1074.022 kb on + strand, within CA264_04640at 1074.023 kb on - strand, within CA264_04640at 1074.026 kb on + strand, within CA264_04640at 1074.026 kb on + strand, within CA264_04640at 1074.027 kb on - strand, within CA264_04640at 1074.043 kb on + strand, within CA264_04640at 1074.043 kb on + strand, within CA264_04640at 1074.043 kb on + strand, within CA264_04640at 1074.044 kb on - strand, within CA264_04640at 1074.046 kb on + strand, within CA264_04640at 1074.047 kb on - strand, within CA264_04640at 1074.052 kb on - strand, within CA264_04640at 1074.052 kb on - strand, within CA264_04640at 1074.185 kb on + strand, within CA264_04640at 1074.326 kb on - strand, within CA264_04640at 1074.326 kb on - strand, within CA264_04640at 1074.326 kb on - strand, within CA264_04640at 1074.328 kb on - strand, within CA264_04640at 1074.328 kb on - strand, within CA264_04640at 1074.339 kb on - strand, within CA264_04640at 1074.515 kb on - strandat 1074.515 kb on - strandat 1074.515 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.552 kb on + strandat 1074.552 kb on + strandat 1074.552 kb on + strandat 1074.556 kb on + strandat 1074.556 kb on + strandat 1074.557 kb on - strandat 1074.557 kb on - strandat 1075.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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1,072,924 + -0.1
1,072,925 - +0.1
1,072,940 - +0.9
1,073,850 + -0.2
1,073,862 + -0.2
1,073,862 + -0.2
1,073,937 + CA264_04640 0.12 -1.0
1,073,937 + CA264_04640 0.12 -0.2
1,073,937 + CA264_04640 0.12 -1.2
1,073,937 + CA264_04640 0.12 +1.6
1,073,938 - CA264_04640 0.12 -0.8
1,074,022 + CA264_04640 0.24 -0.7
1,074,023 - CA264_04640 0.24 +0.0
1,074,026 + CA264_04640 0.25 +0.3
1,074,026 + CA264_04640 0.25 -0.4
1,074,027 - CA264_04640 0.25 +0.4
1,074,043 + CA264_04640 0.27 -0.0
1,074,043 + CA264_04640 0.27 -0.6
1,074,043 + CA264_04640 0.27 -0.8
1,074,044 - CA264_04640 0.27 -0.5
1,074,046 + CA264_04640 0.27 +0.8
1,074,047 - CA264_04640 0.28 -1.3
1,074,052 - CA264_04640 0.28 -0.6
1,074,052 - CA264_04640 0.28 -0.3
1,074,185 + CA264_04640 0.47 -3.0
1,074,326 - CA264_04640 0.68 +0.8
1,074,326 - CA264_04640 0.68 -0.2
1,074,326 - CA264_04640 0.68 -0.8
1,074,328 - CA264_04640 0.68 -1.1
1,074,328 - CA264_04640 0.68 -0.1
1,074,339 - CA264_04640 0.69 +0.8
1,074,515 - -0.3
1,074,515 - -0.6
1,074,515 - +0.1
1,074,517 - -0.5
1,074,517 - -0.4
1,074,517 - -0.3
1,074,517 - -0.4
1,074,517 - -0.5
1,074,552 + -0.9
1,074,552 + -2.3
1,074,552 + -4.1
1,074,556 + -2.7
1,074,556 + -3.3
1,074,557 - -2.5
1,074,557 - +1.6
1,075,403 + +0.3

Or see this region's nucleotide sequence