Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04105 and CA264_04110 are separated by 301 nucleotides CA264_04110 and CA264_04115 are separated by 170 nucleotides
CA264_04105: CA264_04105 - hypothetical protein, at 951,112 to 951,660
_04105
CA264_04110: CA264_04110 - hypothetical protein, at 951,962 to 953,728
_04110
CA264_04115: CA264_04115 - hypothetical protein, at 953,899 to 954,834
_04115
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.997 kb on + strand at 950.998 kb on - strand at 951.057 kb on + strand at 951.061 kb on + strand at 951.062 kb on - strand at 951.062 kb on - strand at 951.113 kb on + strand at 951.189 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.405 kb on - strand, within CA264_04105 at 951.447 kb on + strand, within CA264_04105 at 951.479 kb on + strand, within CA264_04105 at 951.533 kb on - strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.570 kb on - strand, within CA264_04105 at 951.619 kb on - strand at 951.619 kb on - strand at 951.630 kb on - strand at 951.660 kb on + strand at 951.660 kb on + strand at 951.675 kb on + strand at 951.746 kb on - strand at 951.769 kb on + strand at 951.774 kb on - strand at 951.775 kb on + strand at 951.789 kb on + strand at 951.790 kb on - strand at 951.809 kb on - strand at 951.826 kb on - strand at 951.826 kb on - strand at 951.850 kb on - strand at 951.923 kb on - strand at 951.934 kb on + strand at 951.956 kb on - strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.997 kb on + strand at 952.030 kb on + strand at 952.030 kb on + strand at 952.031 kb on - strand at 952.106 kb on + strand at 952.107 kb on - strand at 952.110 kb on + strand at 952.110 kb on + strand at 952.127 kb on + strand at 952.127 kb on + strand at 952.149 kb on - strand, within CA264_04110 at 952.149 kb on - strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.221 kb on - strand, within CA264_04110 at 952.360 kb on + strand, within CA264_04110 at 952.459 kb on + strand, within CA264_04110 at 952.460 kb on - strand, within CA264_04110 at 952.591 kb on + strand, within CA264_04110 at 952.712 kb on + strand, within CA264_04110 at 952.718 kb on + strand, within CA264_04110 at 952.730 kb on + strand, within CA264_04110 at 952.730 kb on + strand, within CA264_04110 at 952.731 kb on - strand, within CA264_04110 at 952.731 kb on - strand, within CA264_04110 at 952.817 kb on + strand, within CA264_04110 at 952.817 kb on + strand, within CA264_04110 at 952.829 kb on + strand, within CA264_04110 at 952.829 kb on + strand, within CA264_04110 at 952.829 kb on + strand, within CA264_04110 at 952.830 kb on - strand, within CA264_04110 at 952.833 kb on + strand, within CA264_04110 at 952.833 kb on + strand, within CA264_04110 at 952.834 kb on - strand, within CA264_04110 at 952.834 kb on - strand, within CA264_04110 at 952.834 kb on - strand, within CA264_04110 at 952.834 kb on - strand, within CA264_04110 at 952.837 kb on + strand, within CA264_04110 at 952.837 kb on + strand, within CA264_04110 at 952.839 kb on + strand, within CA264_04110 at 952.840 kb on - strand, within CA264_04110 at 952.840 kb on - strand, within CA264_04110 at 952.840 kb on - strand, within CA264_04110 at 953.046 kb on - strand, within CA264_04110 at 953.048 kb on + strand, within CA264_04110 at 953.050 kb on + strand, within CA264_04110 at 953.050 kb on + strand, within CA264_04110 at 953.051 kb on - strand, within CA264_04110 at 953.102 kb on - strand, within CA264_04110 at 953.158 kb on + strand, within CA264_04110 at 953.158 kb on + strand, within CA264_04110 at 953.159 kb on - strand, within CA264_04110 at 953.159 kb on - strand, within CA264_04110 at 953.202 kb on + strand, within CA264_04110 at 953.203 kb on - strand, within CA264_04110 at 953.208 kb on + strand, within CA264_04110 at 953.231 kb on + strand, within CA264_04110 at 953.231 kb on + strand, within CA264_04110 at 953.243 kb on + strand, within CA264_04110 at 953.243 kb on + strand, within CA264_04110 at 953.244 kb on - strand, within CA264_04110 at 953.247 kb on - strand, within CA264_04110 at 953.272 kb on - strand at 953.338 kb on - strand, within CA264_04110 at 953.517 kb on - strand, within CA264_04110 at 953.517 kb on - strand, within CA264_04110 at 953.569 kb on + strand at 953.600 kb on - strand at 953.612 kb on + strand at 953.613 kb on - strand at 953.614 kb on + strand at 953.614 kb on + strand at 953.614 kb on + strand at 953.712 kb on + strand at 953.726 kb on + strand at 953.727 kb on - strand at 953.759 kb on + strand at 953.759 kb on + strand at 953.806 kb on + strand at 953.807 kb on - strand at 953.832 kb on - strand at 953.853 kb on + strand at 953.854 kb on - strand at 953.872 kb on + strand at 953.873 kb on - strand at 953.896 kb on + strand at 953.896 kb on + strand at 953.896 kb on + strand at 953.897 kb on - strand at 953.897 kb on - strand at 953.897 kb on - strand at 953.898 kb on + strand at 953.906 kb on + strand at 953.915 kb on + strand at 953.916 kb on - strand at 954.048 kb on - strand, within CA264_04115 at 954.106 kb on + strand, within CA264_04115 at 954.185 kb on - strand, within CA264_04115 at 954.214 kb on + strand, within CA264_04115 at 954.215 kb on - strand, within CA264_04115 at 954.215 kb on - strand, within CA264_04115 at 954.215 kb on - strand, within CA264_04115 at 954.248 kb on + strand, within CA264_04115 at 954.249 kb on - strand, within CA264_04115 at 954.249 kb on - strand, within CA264_04115 at 954.349 kb on + strand, within CA264_04115 at 954.603 kb on - strand, within CA264_04115 at 954.684 kb on + strand, within CA264_04115 at 954.717 kb on + strand, within CA264_04115 at 954.718 kb on - strand, within CA264_04115 at 954.718 kb on - strand, within CA264_04115 at 954.720 kb on + strand, within CA264_04115 at 954.721 kb on - strand, within CA264_04115 at 954.721 kb on - strand, within CA264_04115
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 950,997 + +0.2 950,998 - +0.2 951,057 + -0.5 951,061 + -0.5 951,062 - -0.3 951,062 - +0.9 951,113 + +0.7 951,189 - CA264_04105 0.14 -0.1 951,226 - CA264_04105 0.21 +0.3 951,226 - CA264_04105 0.21 -0.3 951,226 - CA264_04105 0.21 +0.1 951,226 - CA264_04105 0.21 -0.7 951,311 - CA264_04105 0.36 +0.1 951,311 - CA264_04105 0.36 +0.2 951,405 - CA264_04105 0.53 +0.0 951,447 + CA264_04105 0.61 +0.5 951,479 + CA264_04105 0.67 +0.6 951,533 - CA264_04105 0.77 -0.5 951,540 + CA264_04105 0.78 +0.6 951,540 + CA264_04105 0.78 -0.9 951,541 - CA264_04105 0.78 -1.2 951,541 - CA264_04105 0.78 -0.2 951,570 - CA264_04105 0.83 -0.8 951,619 - +0.6 951,619 - -0.1 951,630 - +1.2 951,660 + -0.2 951,660 + -0.6 951,675 + +0.3 951,746 - -0.3 951,769 + +0.2 951,774 - +0.4 951,775 + -1.0 951,789 + -0.7 951,790 - +0.5 951,809 - -0.4 951,826 - -0.0 951,826 - -1.3 951,850 - -0.7 951,923 - +0.3 951,934 + -0.1 951,956 - -0.1 951,959 + +0.0 951,959 + -0.6 951,959 + -0.3 951,959 + -0.3 951,959 + -0.3 951,959 + +0.0 951,960 - +0.3 951,960 - -0.1 951,960 - -0.9 951,997 + -0.2 952,030 + +0.4 952,030 + +0.5 952,031 - +0.1 952,106 + -0.2 952,107 - -0.5 952,110 + +0.3 952,110 + -1.1 952,127 + -0.1 952,127 + -0.3 952,149 - CA264_04110 0.11 -0.5 952,149 - CA264_04110 0.11 -0.4 952,220 + CA264_04110 0.15 +0.8 952,220 + CA264_04110 0.15 +0.6 952,221 - CA264_04110 0.15 -0.0 952,360 + CA264_04110 0.23 +0.1 952,459 + CA264_04110 0.28 +0.2 952,460 - CA264_04110 0.28 -0.0 952,591 + CA264_04110 0.36 -0.4 952,712 + CA264_04110 0.42 +0.1 952,718 + CA264_04110 0.43 +0.5 952,730 + CA264_04110 0.43 +1.5 952,730 + CA264_04110 0.43 -0.0 952,731 - CA264_04110 0.44 -0.4 952,731 - CA264_04110 0.44 +0.2 952,817 + CA264_04110 0.48 +0.6 952,817 + CA264_04110 0.48 +0.3 952,829 + CA264_04110 0.49 +0.5 952,829 + CA264_04110 0.49 +1.8 952,829 + CA264_04110 0.49 -0.1 952,830 - CA264_04110 0.49 +0.3 952,833 + CA264_04110 0.49 -0.2 952,833 + CA264_04110 0.49 -0.4 952,834 - CA264_04110 0.49 -0.4 952,834 - CA264_04110 0.49 -1.3 952,834 - CA264_04110 0.49 -0.1 952,834 - CA264_04110 0.49 -0.5 952,837 + CA264_04110 0.50 -0.5 952,837 + CA264_04110 0.50 +1.5 952,839 + CA264_04110 0.50 -0.4 952,840 - CA264_04110 0.50 +1.6 952,840 - CA264_04110 0.50 -0.7 952,840 - CA264_04110 0.50 +0.3 953,046 - CA264_04110 0.61 -0.0 953,048 + CA264_04110 0.61 -0.3 953,050 + CA264_04110 0.62 +0.1 953,050 + CA264_04110 0.62 +0.8 953,051 - CA264_04110 0.62 +1.3 953,102 - CA264_04110 0.65 -0.3 953,158 + CA264_04110 0.68 -2.3 953,158 + CA264_04110 0.68 +0.1 953,159 - CA264_04110 0.68 -0.8 953,159 - CA264_04110 0.68 +0.3 953,202 + CA264_04110 0.70 +0.2 953,203 - CA264_04110 0.70 +0.4 953,208 + CA264_04110 0.71 -0.2 953,231 + CA264_04110 0.72 +2.3 953,231 + CA264_04110 0.72 -1.4 953,243 + CA264_04110 0.72 -0.4 953,243 + CA264_04110 0.72 -0.5 953,244 - CA264_04110 0.73 +0.2 953,247 - CA264_04110 0.73 -0.8 953,272 - +0.3 953,338 - CA264_04110 0.78 -0.2 953,517 - CA264_04110 0.88 +0.4 953,517 - CA264_04110 0.88 +1.4 953,569 + +0.8 953,600 - +0.2 953,612 + +0.1 953,613 - -0.2 953,614 + -0.5 953,614 + -0.5 953,614 + -0.6 953,712 + -0.0 953,726 + -0.2 953,727 - +0.5 953,759 + -1.4 953,759 + +0.6 953,806 + -0.7 953,807 - +0.5 953,832 - -2.2 953,853 + -0.9 953,854 - -0.1 953,872 + +0.3 953,873 - +0.0 953,896 + -0.3 953,896 + +0.1 953,896 + -1.0 953,897 - -0.4 953,897 - +0.1 953,897 - -0.1 953,898 + +0.1 953,906 + -0.2 953,915 + +0.6 953,916 - +0.7 954,048 - CA264_04115 0.16 -0.3 954,106 + CA264_04115 0.22 +0.2 954,185 - CA264_04115 0.31 -0.5 954,214 + CA264_04115 0.34 -0.0 954,215 - CA264_04115 0.34 +1.4 954,215 - CA264_04115 0.34 -0.7 954,215 - CA264_04115 0.34 +0.3 954,248 + CA264_04115 0.37 +0.3 954,249 - CA264_04115 0.37 -0.1 954,249 - CA264_04115 0.37 -0.4 954,349 + CA264_04115 0.48 +0.6 954,603 - CA264_04115 0.75 -0.6 954,684 + CA264_04115 0.84 -0.3 954,717 + CA264_04115 0.87 -1.0 954,718 - CA264_04115 0.88 -0.5 954,718 - CA264_04115 0.88 -0.7 954,720 + CA264_04115 0.88 +0.4 954,721 - CA264_04115 0.88 -0.2 954,721 - CA264_04115 0.88 +0.3
Or see this region's nucleotide sequence