Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03400

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03395 and CA264_03400 are separated by 237 nucleotidesCA264_03400 and CA264_03405 overlap by 4 nucleotidesCA264_03405 and CA264_03410 are separated by 81 nucleotides CA264_03395: CA264_03395 - phospholipase, at 792,414 to 793,115 _03395 CA264_03400: CA264_03400 - hypothetical protein, at 793,353 to 793,886 _03400 CA264_03405: CA264_03405 - hypothetical protein, at 793,883 to 794,497 _03405 CA264_03410: CA264_03410 - glutamine amidotransferase, at 794,579 to 795,499 _03410 Position (kb) 793 794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 792.378 kb on + strandat 792.382 kb on + strandat 792.383 kb on - strandat 792.383 kb on - strandat 792.435 kb on + strandat 792.436 kb on - strandat 792.436 kb on - strandat 792.436 kb on - strandat 792.544 kb on - strand, within CA264_03395at 792.693 kb on + strand, within CA264_03395at 792.707 kb on + strand, within CA264_03395at 792.707 kb on + strand, within CA264_03395at 792.742 kb on - strand, within CA264_03395at 792.742 kb on - strand, within CA264_03395at 792.777 kb on + strand, within CA264_03395at 792.832 kb on - strand, within CA264_03395at 792.869 kb on + strand, within CA264_03395at 792.869 kb on + strand, within CA264_03395at 792.903 kb on + strand, within CA264_03395at 792.904 kb on - strand, within CA264_03395at 792.939 kb on - strand, within CA264_03395at 792.983 kb on + strand, within CA264_03395at 793.028 kb on - strand, within CA264_03395at 793.028 kb on - strand, within CA264_03395at 793.032 kb on + strand, within CA264_03395at 793.032 kb on + strand, within CA264_03395at 793.033 kb on - strand, within CA264_03395at 793.035 kb on - strand, within CA264_03395at 793.079 kb on + strandat 793.113 kb on + strandat 793.194 kb on + strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.196 kb on + strandat 793.196 kb on + strandat 793.197 kb on - strandat 793.197 kb on - strandat 793.292 kb on + strandat 793.352 kb on + strandat 793.365 kb on - strandat 793.389 kb on + strandat 793.390 kb on - strandat 793.397 kb on - strandat 793.397 kb on - strandat 793.440 kb on + strand, within CA264_03400at 793.450 kb on - strand, within CA264_03400at 793.483 kb on + strand, within CA264_03400at 793.487 kb on - strand, within CA264_03400at 793.557 kb on + strand, within CA264_03400at 793.557 kb on + strand, within CA264_03400at 793.558 kb on - strand, within CA264_03400at 793.558 kb on - strand, within CA264_03400at 793.563 kb on + strand, within CA264_03400at 793.668 kb on - strand, within CA264_03400at 793.844 kb on - strandat 793.892 kb on - strandat 793.903 kb on + strandat 793.904 kb on - strandat 793.906 kb on - strandat 793.929 kb on - strandat 793.968 kb on + strand, within CA264_03405at 794.214 kb on + strand, within CA264_03405at 794.215 kb on - strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.238 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.255 kb on + strand, within CA264_03405at 794.256 kb on - strand, within CA264_03405at 794.257 kb on + strand, within CA264_03405at 794.482 kb on + strandat 794.483 kb on - strandat 794.483 kb on - strandat 794.484 kb on + strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.604 kb on - strandat 794.663 kb on + strandat 794.663 kb on + strandat 794.676 kb on - strand, within CA264_03410at 794.720 kb on + strand, within CA264_03410at 794.721 kb on - strand, within CA264_03410at 794.769 kb on + strand, within CA264_03410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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792,378 + +0.3
792,382 + +0.7
792,383 - +0.6
792,383 - -0.4
792,435 + -0.2
792,436 - -1.1
792,436 - -0.5
792,436 - -0.1
792,544 - CA264_03395 0.19 +0.4
792,693 + CA264_03395 0.40 -1.1
792,707 + CA264_03395 0.42 -0.1
792,707 + CA264_03395 0.42 -0.0
792,742 - CA264_03395 0.47 -0.4
792,742 - CA264_03395 0.47 +0.1
792,777 + CA264_03395 0.52 -0.7
792,832 - CA264_03395 0.60 +0.5
792,869 + CA264_03395 0.65 -0.4
792,869 + CA264_03395 0.65 -0.4
792,903 + CA264_03395 0.70 +0.9
792,904 - CA264_03395 0.70 +0.4
792,939 - CA264_03395 0.75 +1.1
792,983 + CA264_03395 0.81 +0.7
793,028 - CA264_03395 0.87 +0.2
793,028 - CA264_03395 0.87 -1.1
793,032 + CA264_03395 0.88 +0.0
793,032 + CA264_03395 0.88 +0.9
793,033 - CA264_03395 0.88 -0.3
793,035 - CA264_03395 0.88 +0.3
793,079 + +0.4
793,113 + +0.3
793,194 + +0.0
793,195 - -0.5
793,195 - +0.0
793,195 - +0.3
793,195 - -0.9
793,196 + +0.2
793,196 + -0.2
793,197 - -0.9
793,197 - -2.0
793,292 + +3.0
793,352 + +0.0
793,365 - +0.2
793,389 + -0.2
793,390 - -1.4
793,397 - +0.2
793,397 - -1.2
793,440 + CA264_03400 0.16 -0.9
793,450 - CA264_03400 0.18 -0.1
793,483 + CA264_03400 0.24 +0.9
793,487 - CA264_03400 0.25 +0.1
793,557 + CA264_03400 0.38 -0.3
793,557 + CA264_03400 0.38 +0.3
793,558 - CA264_03400 0.38 +0.1
793,558 - CA264_03400 0.38 +1.7
793,563 + CA264_03400 0.39 -0.4
793,668 - CA264_03400 0.59 +0.5
793,844 - +0.6
793,892 - -0.1
793,903 + +1.2
793,904 - -1.0
793,906 - -0.3
793,929 - -0.8
793,968 + CA264_03405 0.14 +0.7
794,214 + CA264_03405 0.54 +0.7
794,215 - CA264_03405 0.54 -0.5
794,237 + CA264_03405 0.58 -0.6
794,237 + CA264_03405 0.58 +0.1
794,238 - CA264_03405 0.58 +0.3
794,251 - CA264_03405 0.60 -0.1
794,251 - CA264_03405 0.60 +0.2
794,255 + CA264_03405 0.60 -0.6
794,256 - CA264_03405 0.61 +0.3
794,257 + CA264_03405 0.61 +0.2
794,482 + -0.8
794,483 - +0.2
794,483 - +0.5
794,484 + -0.3
794,485 - +0.3
794,485 - +0.3
794,485 - -0.3
794,485 - +1.5
794,604 - -0.8
794,663 + -0.3
794,663 + +0.1
794,676 - CA264_03410 0.11 -0.5
794,720 + CA264_03410 0.15 +0.4
794,721 - CA264_03410 0.15 +1.1
794,769 + CA264_03410 0.21 -0.7

Or see this region's nucleotide sequence