Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01545 and CA264_01550 are separated by 2 nucleotides CA264_01550 and CA264_01555 are separated by 4 nucleotides
CA264_01545: CA264_01545 - 3-deoxy-7-phosphoheptulonate synthase, at 364,915 to 366,036
_01545
CA264_01550: CA264_01550 - aminotransferase, at 366,039 to 367,220
_01550
CA264_01555: CA264_01555 - hypothetical protein, at 367,225 to 368,091
_01555
Position (kb) 366
367
368 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 365.622 kb on + strand, within CA264_01545 at 365.623 kb on - strand, within CA264_01545 at 365.635 kb on + strand, within CA264_01545 at 365.761 kb on + strand, within CA264_01545 at 365.761 kb on + strand, within CA264_01545 at 365.771 kb on - strand, within CA264_01545 at 366.000 kb on + strand at 366.018 kb on + strand at 366.025 kb on - strand at 366.030 kb on + strand at 366.030 kb on + strand at 366.030 kb on + strand at 366.031 kb on - strand at 366.043 kb on - strand at 366.043 kb on - strand at 366.205 kb on + strand, within CA264_01550 at 366.214 kb on - strand, within CA264_01550 at 366.285 kb on + strand, within CA264_01550 at 366.286 kb on - strand, within CA264_01550 at 366.329 kb on - strand, within CA264_01550 at 366.417 kb on + strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.498 kb on - strand, within CA264_01550 at 366.550 kb on - strand, within CA264_01550 at 366.551 kb on + strand, within CA264_01550 at 366.556 kb on - strand, within CA264_01550 at 366.642 kb on + strand, within CA264_01550 at 366.659 kb on + strand, within CA264_01550 at 366.698 kb on - strand, within CA264_01550 at 366.717 kb on + strand, within CA264_01550 at 366.718 kb on - strand, within CA264_01550 at 366.790 kb on + strand, within CA264_01550 at 366.896 kb on + strand, within CA264_01550 at 366.961 kb on + strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.973 kb on + strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.175 kb on - strand at 367.208 kb on + strand at 367.212 kb on + strand at 367.212 kb on + strand at 367.213 kb on - strand at 367.260 kb on + strand at 367.271 kb on - strand at 367.386 kb on - strand, within CA264_01555 at 367.432 kb on + strand, within CA264_01555 at 367.568 kb on + strand, within CA264_01555 at 367.616 kb on + strand, within CA264_01555 at 367.617 kb on - strand, within CA264_01555 at 367.660 kb on + strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.785 kb on + strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.889 kb on + strand, within CA264_01555 at 368.005 kb on + strand at 368.148 kb on - strand at 368.150 kb on - strand at 368.173 kb on + strand at 368.174 kb on - strand at 368.180 kb on - strand at 368.215 kb on + strand at 368.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 365,622 + CA264_01545 0.63 -0.2 365,623 - CA264_01545 0.63 +0.9 365,635 + CA264_01545 0.64 -0.8 365,761 + CA264_01545 0.75 -0.8 365,761 + CA264_01545 0.75 -0.6 365,771 - CA264_01545 0.76 -0.6 366,000 + +1.2 366,018 + +0.1 366,025 - +0.1 366,030 + +0.2 366,030 + -0.4 366,030 + -0.6 366,031 - -0.9 366,043 - +0.5 366,043 - -0.6 366,205 + CA264_01550 0.14 -0.9 366,214 - CA264_01550 0.15 +0.6 366,285 + CA264_01550 0.21 +0.1 366,286 - CA264_01550 0.21 +0.9 366,329 - CA264_01550 0.25 +1.4 366,417 + CA264_01550 0.32 -0.6 366,439 - CA264_01550 0.34 +0.0 366,439 - CA264_01550 0.34 -0.4 366,498 - CA264_01550 0.39 -0.9 366,550 - CA264_01550 0.43 +1.1 366,551 + CA264_01550 0.43 -0.8 366,556 - CA264_01550 0.44 -0.6 366,642 + CA264_01550 0.51 -0.8 366,659 + CA264_01550 0.52 -0.9 366,698 - CA264_01550 0.56 -1.2 366,717 + CA264_01550 0.57 -0.5 366,718 - CA264_01550 0.57 -1.3 366,790 + CA264_01550 0.64 +1.5 366,896 + CA264_01550 0.73 -1.4 366,961 + CA264_01550 0.78 -0.3 366,962 - CA264_01550 0.78 -0.8 366,962 - CA264_01550 0.78 -0.3 366,973 + CA264_01550 0.79 +0.7 367,090 - CA264_01550 0.89 -1.2 367,090 - CA264_01550 0.89 -0.9 367,090 - CA264_01550 0.89 +0.0 367,175 - -1.3 367,208 + -0.2 367,212 + -0.7 367,212 + +0.2 367,213 - -0.9 367,260 + +0.6 367,271 - -0.6 367,386 - CA264_01555 0.19 -0.0 367,432 + CA264_01555 0.24 -1.1 367,568 + CA264_01555 0.40 -0.5 367,616 + CA264_01555 0.45 -0.7 367,617 - CA264_01555 0.45 -0.8 367,660 + CA264_01555 0.50 +3.2 367,661 - CA264_01555 0.50 -1.2 367,661 - CA264_01555 0.50 -2.2 367,785 + CA264_01555 0.65 -0.7 367,786 - CA264_01555 0.65 -0.3 367,786 - CA264_01555 0.65 -0.9 367,889 + CA264_01555 0.77 -0.1 368,005 + -0.0 368,148 - +0.1 368,150 - -0.7 368,173 + -0.7 368,174 - -0.5 368,180 - -0.6 368,215 + +0.4 368,216 - -0.2
Or see this region's nucleotide sequence