Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01165

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01160 and CA264_01165 are separated by 87 nucleotidesCA264_01165 and CA264_01170 are separated by 79 nucleotides CA264_01160: CA264_01160 - peptidase M28 family protein, at 255,610 to 257,037 _01160 CA264_01165: CA264_01165 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 257,125 to 258,336 _01165 CA264_01170: CA264_01170 - hypothetical protein, at 258,416 to 259,414 _01170 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.367 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.428 kb on + strand, within CA264_01160at 256.456 kb on - strand, within CA264_01160at 256.456 kb on - strand, within CA264_01160at 256.602 kb on + strand, within CA264_01160at 256.602 kb on + strand, within CA264_01160at 256.603 kb on - strand, within CA264_01160at 256.636 kb on - strand, within CA264_01160at 256.674 kb on + strand, within CA264_01160at 256.675 kb on - strand, within CA264_01160at 256.873 kb on - strand, within CA264_01160at 256.901 kb on - strandat 256.935 kb on - strandat 256.935 kb on - strandat 256.968 kb on + strandat 256.984 kb on + strandat 256.984 kb on + strandat 256.985 kb on - strandat 257.046 kb on - strandat 257.052 kb on - strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.116 kb on - strandat 257.116 kb on - strandat 257.117 kb on + strandat 257.117 kb on + strandat 257.118 kb on - strandat 257.127 kb on - strandat 257.193 kb on - strandat 257.272 kb on + strand, within CA264_01165at 257.273 kb on - strand, within CA264_01165at 257.295 kb on + strand, within CA264_01165at 257.310 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.361 kb on - strand, within CA264_01165at 257.415 kb on - strand, within CA264_01165at 257.581 kb on - strand, within CA264_01165at 257.584 kb on - strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.750 kb on - strand, within CA264_01165at 257.783 kb on + strand, within CA264_01165at 257.944 kb on + strand, within CA264_01165at 257.945 kb on - strand, within CA264_01165at 257.969 kb on - strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165at 258.208 kb on + strand, within CA264_01165at 258.211 kb on + strand, within CA264_01165at 258.297 kb on - strandat 258.375 kb on + strandat 258.375 kb on + strandat 258.394 kb on + strandat 258.395 kb on - strandat 258.441 kb on - strandat 258.477 kb on - strandat 258.477 kb on - strandat 258.477 kb on - strandat 258.497 kb on - strandat 258.535 kb on - strand, within CA264_01170at 258.561 kb on + strand, within CA264_01170at 258.562 kb on - strand, within CA264_01170at 258.562 kb on - strand, within CA264_01170at 258.600 kb on + strand, within CA264_01170at 258.751 kb on - strand, within CA264_01170at 258.834 kb on + strand, within CA264_01170at 258.835 kb on - strand, within CA264_01170at 258.835 kb on - strand, within CA264_01170at 258.849 kb on + strand, within CA264_01170at 258.849 kb on + strand, within CA264_01170at 258.887 kb on - strand, within CA264_01170at 258.949 kb on + strand, within CA264_01170at 258.950 kb on - strand, within CA264_01170at 258.977 kb on + strand, within CA264_01170at 258.978 kb on - strand, within CA264_01170at 259.027 kb on - strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.278 kb on - strand, within CA264_01170at 259.328 kb on + strandat 259.329 kb on - strandat 259.332 kb on + strandat 259.332 kb on + strandat 259.332 kb on + strandat 259.333 kb on - strandat 259.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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256,367 - CA264_01160 0.53 -0.3
256,409 - CA264_01160 0.56 +0.9
256,409 - CA264_01160 0.56 +0.2
256,409 - CA264_01160 0.56 -0.1
256,409 - CA264_01160 0.56 -0.1
256,428 + CA264_01160 0.57 -0.0
256,456 - CA264_01160 0.59 +0.3
256,456 - CA264_01160 0.59 -0.4
256,602 + CA264_01160 0.69 -0.1
256,602 + CA264_01160 0.69 -0.2
256,603 - CA264_01160 0.70 -0.4
256,636 - CA264_01160 0.72 -0.2
256,674 + CA264_01160 0.75 +0.5
256,675 - CA264_01160 0.75 +0.4
256,873 - CA264_01160 0.88 +0.1
256,901 - +0.4
256,935 - +1.8
256,935 - -0.3
256,968 + +0.6
256,984 + -0.8
256,984 + -0.4
256,985 - +0.1
257,046 - +0.6
257,052 - -0.2
257,115 + +0.7
257,115 + -0.1
257,115 + +0.7
257,116 - -0.2
257,116 - +1.2
257,117 + -1.0
257,117 + -0.2
257,118 - -0.1
257,127 - -0.5
257,193 - -1.2
257,272 + CA264_01165 0.12 +0.8
257,273 - CA264_01165 0.12 -0.3
257,295 + CA264_01165 0.14 -0.6
257,310 + CA264_01165 0.15 -1.2
257,360 + CA264_01165 0.19 -0.2
257,360 + CA264_01165 0.19 +0.1
257,360 + CA264_01165 0.19 -0.5
257,361 - CA264_01165 0.19 -1.1
257,415 - CA264_01165 0.24 +0.4
257,581 - CA264_01165 0.38 -1.2
257,584 - CA264_01165 0.38 -0.4
257,585 + CA264_01165 0.38 -0.2
257,585 + CA264_01165 0.38 -0.9
257,750 - CA264_01165 0.52 -1.9
257,783 + CA264_01165 0.54 -0.4
257,944 + CA264_01165 0.68 +0.2
257,945 - CA264_01165 0.68 -0.4
257,969 - CA264_01165 0.70 -0.4
257,997 + CA264_01165 0.72 -1.0
257,997 + CA264_01165 0.72 -0.6
258,208 + CA264_01165 0.89 -0.7
258,211 + CA264_01165 0.90 -0.5
258,297 - -0.4
258,375 + +0.2
258,375 + -0.5
258,394 + -0.0
258,395 - +1.6
258,441 - +0.8
258,477 - +1.1
258,477 - -0.4
258,477 - -0.2
258,497 - -0.4
258,535 - CA264_01170 0.12 -1.8
258,561 + CA264_01170 0.15 -0.1
258,562 - CA264_01170 0.15 -0.4
258,562 - CA264_01170 0.15 +0.4
258,600 + CA264_01170 0.18 +1.0
258,751 - CA264_01170 0.34 -0.2
258,834 + CA264_01170 0.42 -0.6
258,835 - CA264_01170 0.42 +0.0
258,835 - CA264_01170 0.42 -0.2
258,849 + CA264_01170 0.43 -0.1
258,849 + CA264_01170 0.43 -0.6
258,887 - CA264_01170 0.47 -0.1
258,949 + CA264_01170 0.53 -0.0
258,950 - CA264_01170 0.53 +0.3
258,977 + CA264_01170 0.56 -0.3
258,978 - CA264_01170 0.56 +0.1
259,027 - CA264_01170 0.61 -1.1
259,277 + CA264_01170 0.86 +2.1
259,277 + CA264_01170 0.86 -0.2
259,277 + CA264_01170 0.86 +1.1
259,278 - CA264_01170 0.86 -0.6
259,328 + -0.3
259,329 - -0.0
259,332 + -0.1
259,332 + -0.1
259,332 + +0.4
259,333 - +0.3
259,333 - +0.8

Or see this region's nucleotide sequence