Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01090

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01085 and CA264_01090 are separated by 2 nucleotidesCA264_01090 and CA264_01095 are separated by 323 nucleotides CA264_01085: CA264_01085 - hypothetical protein, at 238,338 to 238,883 _01085 CA264_01090: CA264_01090 - hypothetical protein, at 238,886 to 239,275 _01090 CA264_01095: CA264_01095 - S9 family peptidase, at 239,599 to 241,761 _01095 Position (kb) 238 239 240Strain fitness (log2 ratio) -1 0 1 2at 237.960 kb on + strandat 237.999 kb on - strandat 238.040 kb on - strandat 238.148 kb on + strandat 238.148 kb on + strandat 238.255 kb on - strandat 238.316 kb on + strandat 238.317 kb on - strandat 238.321 kb on + strandat 238.321 kb on + strandat 238.328 kb on + strandat 238.333 kb on - strandat 238.340 kb on - strandat 238.396 kb on - strand, within CA264_01085at 238.430 kb on - strand, within CA264_01085at 238.438 kb on + strand, within CA264_01085at 238.438 kb on + strand, within CA264_01085at 238.439 kb on - strand, within CA264_01085at 238.441 kb on + strand, within CA264_01085at 238.442 kb on - strand, within CA264_01085at 238.442 kb on - strand, within CA264_01085at 238.508 kb on - strand, within CA264_01085at 238.508 kb on - strand, within CA264_01085at 238.519 kb on + strand, within CA264_01085at 238.519 kb on + strand, within CA264_01085at 238.522 kb on + strand, within CA264_01085at 238.523 kb on - strand, within CA264_01085at 238.523 kb on - strand, within CA264_01085at 238.523 kb on - strand, within CA264_01085at 238.584 kb on + strand, within CA264_01085at 238.729 kb on + strand, within CA264_01085at 238.730 kb on - strand, within CA264_01085at 238.758 kb on + strand, within CA264_01085at 238.758 kb on + strand, within CA264_01085at 238.759 kb on - strand, within CA264_01085at 238.765 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.774 kb on - strand, within CA264_01085at 238.774 kb on - strand, within CA264_01085at 238.878 kb on - strandat 238.878 kb on - strandat 238.883 kb on + strandat 238.884 kb on - strandat 238.884 kb on - strandat 238.887 kb on + strandat 238.887 kb on + strandat 238.888 kb on - strandat 238.953 kb on - strand, within CA264_01090at 239.000 kb on - strand, within CA264_01090at 239.034 kb on - strand, within CA264_01090at 239.139 kb on + strand, within CA264_01090at 239.139 kb on + strand, within CA264_01090at 239.140 kb on - strand, within CA264_01090at 239.149 kb on + strand, within CA264_01090at 239.149 kb on + strand, within CA264_01090at 239.235 kb on + strand, within CA264_01090at 239.268 kb on + strandat 239.269 kb on - strandat 239.269 kb on - strandat 239.269 kb on - strandat 239.288 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.302 kb on - strandat 239.346 kb on + strandat 239.347 kb on - strandat 239.406 kb on + strandat 239.406 kb on + strandat 239.411 kb on + strandat 239.519 kb on - strandat 239.544 kb on + strandat 239.547 kb on + strandat 239.548 kb on - strandat 239.548 kb on - strandat 239.548 kb on - strandat 239.694 kb on - strandat 239.705 kb on - strandat 239.809 kb on + strandat 239.895 kb on - strand, within CA264_01095at 239.898 kb on - strand, within CA264_01095at 239.932 kb on + strand, within CA264_01095at 239.932 kb on + strand, within CA264_01095at 240.045 kb on - strand, within CA264_01095at 240.145 kb on + strand, within CA264_01095at 240.159 kb on + strand, within CA264_01095at 240.161 kb on + strand, within CA264_01095at 240.162 kb on - strand, within CA264_01095at 240.245 kb on + strand, within CA264_01095at 240.246 kb on - strand, within CA264_01095at 240.251 kb on + strand, within CA264_01095at 240.251 kb on + strand, within CA264_01095at 240.266 kb on + strand, within CA264_01095at 240.266 kb on + strand, within CA264_01095

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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237,960 + -0.7
237,999 - +0.2
238,040 - -1.1
238,148 + +0.2
238,148 + +1.2
238,255 - +0.6
238,316 + -0.2
238,317 - +0.5
238,321 + +1.5
238,321 + -1.4
238,328 + +1.0
238,333 - +0.3
238,340 - +0.6
238,396 - CA264_01085 0.11 -1.3
238,430 - CA264_01085 0.17 -1.1
238,438 + CA264_01085 0.18 +1.1
238,438 + CA264_01085 0.18 -1.0
238,439 - CA264_01085 0.18 -1.2
238,441 + CA264_01085 0.19 +0.5
238,442 - CA264_01085 0.19 +0.0
238,442 - CA264_01085 0.19 -0.6
238,508 - CA264_01085 0.31 -0.1
238,508 - CA264_01085 0.31 +0.1
238,519 + CA264_01085 0.33 +0.5
238,519 + CA264_01085 0.33 -0.3
238,522 + CA264_01085 0.34 -0.2
238,523 - CA264_01085 0.34 -1.2
238,523 - CA264_01085 0.34 +0.3
238,523 - CA264_01085 0.34 -0.6
238,584 + CA264_01085 0.45 +2.1
238,729 + CA264_01085 0.72 +1.6
238,730 - CA264_01085 0.72 -1.5
238,758 + CA264_01085 0.77 -0.6
238,758 + CA264_01085 0.77 -0.4
238,759 - CA264_01085 0.77 -0.1
238,765 + CA264_01085 0.78 -0.9
238,773 + CA264_01085 0.80 +0.0
238,773 + CA264_01085 0.80 -1.0
238,773 + CA264_01085 0.80 -0.4
238,774 - CA264_01085 0.80 -0.3
238,774 - CA264_01085 0.80 -0.2
238,878 - +0.1
238,878 - +0.0
238,883 + +0.5
238,884 - -0.2
238,884 - -1.3
238,887 + -0.3
238,887 + -0.4
238,888 - -0.8
238,953 - CA264_01090 0.17 +0.8
239,000 - CA264_01090 0.29 -0.2
239,034 - CA264_01090 0.38 +0.2
239,139 + CA264_01090 0.65 -0.8
239,139 + CA264_01090 0.65 -0.6
239,140 - CA264_01090 0.65 -0.8
239,149 + CA264_01090 0.67 -1.7
239,149 + CA264_01090 0.67 -0.4
239,235 + CA264_01090 0.89 +0.1
239,268 + -0.3
239,269 - +1.1
239,269 - -0.1
239,269 - -1.0
239,288 + +0.0
239,301 + -0.4
239,301 + -0.2
239,302 - -0.5
239,346 + -0.8
239,347 - -0.2
239,406 + -0.4
239,406 + +0.2
239,411 + +2.0
239,519 - +0.1
239,544 + +0.1
239,547 + -0.0
239,548 - -0.9
239,548 - -0.2
239,548 - +0.2
239,694 - -0.5
239,705 - -0.3
239,809 + +1.2
239,895 - CA264_01095 0.14 -0.2
239,898 - CA264_01095 0.14 +0.1
239,932 + CA264_01095 0.15 +0.2
239,932 + CA264_01095 0.15 -1.1
240,045 - CA264_01095 0.21 +1.1
240,145 + CA264_01095 0.25 +1.1
240,159 + CA264_01095 0.26 -0.9
240,161 + CA264_01095 0.26 +0.0
240,162 - CA264_01095 0.26 -0.3
240,245 + CA264_01095 0.30 -0.5
240,246 - CA264_01095 0.30 -0.6
240,251 + CA264_01095 0.30 -0.7
240,251 + CA264_01095 0.30 +0.3
240,266 + CA264_01095 0.31 +0.2
240,266 + CA264_01095 0.31 +0.4

Or see this region's nucleotide sequence