Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00680

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00675 and CA264_00680 are separated by 448 nucleotidesCA264_00680 and CA264_00685 are separated by 140 nucleotidesCA264_00685 and CA264_00690 are separated by 55 nucleotides CA264_00675: CA264_00675 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 147,833 to 148,459 _00675 CA264_00680: CA264_00680 - alpha/beta hydrolase, at 148,908 to 149,861 _00680 CA264_00685: CA264_00685 - hypothetical protein, at 150,002 to 150,430 _00685 CA264_00690: CA264_00690 - hypothetical protein, at 150,486 to 151,487 _00690 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1 2at 147.912 kb on - strand, within CA264_00675at 147.912 kb on - strand, within CA264_00675at 148.000 kb on - strand, within CA264_00675at 148.013 kb on - strand, within CA264_00675at 148.013 kb on - strand, within CA264_00675at 148.220 kb on + strand, within CA264_00675at 148.229 kb on - strand, within CA264_00675at 148.322 kb on + strand, within CA264_00675at 148.323 kb on - strand, within CA264_00675at 148.370 kb on - strand, within CA264_00675at 148.372 kb on + strand, within CA264_00675at 148.389 kb on + strand, within CA264_00675at 148.457 kb on + strandat 148.478 kb on + strandat 148.479 kb on - strandat 148.507 kb on + strandat 148.507 kb on + strandat 148.508 kb on - strandat 148.511 kb on + strandat 148.512 kb on - strandat 148.738 kb on + strandat 148.738 kb on + strandat 148.749 kb on + strandat 148.792 kb on + strandat 148.793 kb on - strandat 148.793 kb on - strandat 148.794 kb on + strandat 148.794 kb on + strandat 148.795 kb on - strandat 148.795 kb on - strandat 148.795 kb on - strandat 148.795 kb on - strandat 148.798 kb on + strandat 148.799 kb on - strandat 148.799 kb on - strandat 148.893 kb on - strandat 148.909 kb on + strandat 149.024 kb on - strand, within CA264_00680at 149.150 kb on - strand, within CA264_00680at 149.150 kb on - strand, within CA264_00680at 149.152 kb on + strand, within CA264_00680at 149.152 kb on + strand, within CA264_00680at 149.231 kb on - strand, within CA264_00680at 149.257 kb on + strand, within CA264_00680at 149.258 kb on - strand, within CA264_00680at 149.258 kb on - strand, within CA264_00680at 149.314 kb on + strand, within CA264_00680at 149.314 kb on + strand, within CA264_00680at 149.315 kb on - strand, within CA264_00680at 149.316 kb on + strand, within CA264_00680at 149.317 kb on - strand, within CA264_00680at 149.419 kb on + strand, within CA264_00680at 149.420 kb on - strand, within CA264_00680at 149.579 kb on - strand, within CA264_00680at 149.634 kb on - strand, within CA264_00680at 149.636 kb on + strand, within CA264_00680at 149.637 kb on - strand, within CA264_00680at 149.637 kb on - strand, within CA264_00680at 149.638 kb on + strand, within CA264_00680at 149.824 kb on + strandat 149.867 kb on - strandat 149.883 kb on - strandat 149.959 kb on - strandat 149.996 kb on - strandat 150.001 kb on + strandat 150.002 kb on - strandat 150.031 kb on - strandat 150.053 kb on - strand, within CA264_00685at 150.058 kb on + strand, within CA264_00685at 150.058 kb on + strand, within CA264_00685at 150.161 kb on + strand, within CA264_00685at 150.162 kb on - strand, within CA264_00685at 150.248 kb on + strand, within CA264_00685at 150.357 kb on + strand, within CA264_00685at 150.378 kb on + strand, within CA264_00685at 150.379 kb on - strand, within CA264_00685at 150.379 kb on - strand, within CA264_00685at 150.379 kb on - strand, within CA264_00685at 150.379 kb on - strand, within CA264_00685at 150.393 kb on + strandat 150.394 kb on - strandat 150.394 kb on - strandat 150.425 kb on - strandat 150.429 kb on - strandat 150.429 kb on - strandat 150.465 kb on + strandat 150.508 kb on - strandat 150.571 kb on + strandat 150.692 kb on - strand, within CA264_00690at 150.695 kb on - strand, within CA264_00690at 150.760 kb on + strand, within CA264_00690at 150.765 kb on - strand, within CA264_00690at 150.822 kb on - strand, within CA264_00690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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147,912 - CA264_00675 0.13 +1.0
147,912 - CA264_00675 0.13 +1.0
148,000 - CA264_00675 0.27 +0.1
148,013 - CA264_00675 0.29 +1.4
148,013 - CA264_00675 0.29 +0.2
148,220 + CA264_00675 0.62 -0.1
148,229 - CA264_00675 0.63 +0.5
148,322 + CA264_00675 0.78 -0.1
148,323 - CA264_00675 0.78 +0.1
148,370 - CA264_00675 0.86 -0.1
148,372 + CA264_00675 0.86 -1.4
148,389 + CA264_00675 0.89 +2.2
148,457 + +0.4
148,478 + -1.1
148,479 - +0.2
148,507 + -0.2
148,507 + -0.5
148,508 - -0.1
148,511 + -1.5
148,512 - -1.1
148,738 + +0.2
148,738 + -1.8
148,749 + +1.1
148,792 + +0.2
148,793 - -0.1
148,793 - -0.0
148,794 + -0.1
148,794 + -0.3
148,795 - -0.2
148,795 - -0.0
148,795 - +1.6
148,795 - -1.0
148,798 + +1.4
148,799 - -0.5
148,799 - -0.0
148,893 - +0.1
148,909 + +0.4
149,024 - CA264_00680 0.12 -0.2
149,150 - CA264_00680 0.25 -1.8
149,150 - CA264_00680 0.25 -0.5
149,152 + CA264_00680 0.26 +0.3
149,152 + CA264_00680 0.26 -0.8
149,231 - CA264_00680 0.34 +1.7
149,257 + CA264_00680 0.37 -0.3
149,258 - CA264_00680 0.37 +0.3
149,258 - CA264_00680 0.37 +0.3
149,314 + CA264_00680 0.43 -0.1
149,314 + CA264_00680 0.43 -0.3
149,315 - CA264_00680 0.43 +0.8
149,316 + CA264_00680 0.43 -0.3
149,317 - CA264_00680 0.43 +0.2
149,419 + CA264_00680 0.54 +0.1
149,420 - CA264_00680 0.54 -0.9
149,579 - CA264_00680 0.70 +0.5
149,634 - CA264_00680 0.76 +0.1
149,636 + CA264_00680 0.76 +0.6
149,637 - CA264_00680 0.76 +0.1
149,637 - CA264_00680 0.76 +0.4
149,638 + CA264_00680 0.77 +0.5
149,824 + -0.1
149,867 - +0.6
149,883 - +0.3
149,959 - -0.2
149,996 - -0.6
150,001 + +0.0
150,002 - +0.5
150,031 - +1.4
150,053 - CA264_00685 0.12 -0.3
150,058 + CA264_00685 0.13 -1.1
150,058 + CA264_00685 0.13 -0.3
150,161 + CA264_00685 0.37 -0.5
150,162 - CA264_00685 0.37 +0.2
150,248 + CA264_00685 0.57 -0.6
150,357 + CA264_00685 0.83 +0.2
150,378 + CA264_00685 0.88 +0.1
150,379 - CA264_00685 0.88 +0.1
150,379 - CA264_00685 0.88 -0.3
150,379 - CA264_00685 0.88 -1.2
150,379 - CA264_00685 0.88 -0.1
150,393 + -0.8
150,394 - -0.3
150,394 - +0.2
150,425 - +0.4
150,429 - -0.7
150,429 - -0.3
150,465 + +0.2
150,508 - -0.3
150,571 + +0.2
150,692 - CA264_00690 0.21 +0.3
150,695 - CA264_00690 0.21 +0.0
150,760 + CA264_00690 0.27 -0.3
150,765 - CA264_00690 0.28 -0.4
150,822 - CA264_00690 0.34 +0.3

Or see this region's nucleotide sequence