Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00445

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00440 and CA264_00445 are separated by 710 nucleotidesCA264_00445 and CA264_00450 are separated by 153 nucleotidesCA264_00450 and CA264_00455 overlap by 52 nucleotides CA264_00440: CA264_00440 - YihA family ribosome biogenesis GTP-binding protein, at 94,208 to 94,816 _00440 CA264_00445: CA264_00445 - hypothetical protein, at 95,527 to 97,518 _00445 CA264_00450: CA264_00450 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 97,672 to 98,394 _00450 CA264_00455: CA264_00455 - PorT-like protein, at 98,343 to 99,113 _00455 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 94.808 kb on + strandat 94.808 kb on + strandat 94.919 kb on + strandat 94.926 kb on + strandat 94.947 kb on + strandat 94.948 kb on - strandat 94.971 kb on + strandat 94.972 kb on - strandat 94.974 kb on - strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.978 kb on - strandat 94.978 kb on - strandat 95.075 kb on + strandat 95.076 kb on - strandat 95.177 kb on - strandat 95.180 kb on + strandat 95.181 kb on - strandat 95.226 kb on - strandat 95.256 kb on - strandat 95.291 kb on - strandat 95.310 kb on + strandat 95.401 kb on + strandat 95.401 kb on + strandat 95.402 kb on - strandat 95.402 kb on - strandat 95.402 kb on - strandat 95.412 kb on + strandat 95.424 kb on + strandat 95.510 kb on - strandat 95.534 kb on - strandat 95.624 kb on + strandat 95.625 kb on - strandat 95.662 kb on + strandat 95.663 kb on - strandat 95.683 kb on + strandat 95.684 kb on - strandat 95.684 kb on - strandat 95.684 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.729 kb on - strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.743 kb on - strand, within CA264_00445at 95.743 kb on - strand, within CA264_00445at 95.779 kb on + strand, within CA264_00445at 95.831 kb on - strand, within CA264_00445at 95.959 kb on + strand, within CA264_00445at 95.964 kb on + strand, within CA264_00445at 95.964 kb on + strand, within CA264_00445at 96.079 kb on + strand, within CA264_00445at 96.079 kb on + strand, within CA264_00445at 96.080 kb on - strand, within CA264_00445at 96.080 kb on - strand, within CA264_00445at 96.080 kb on - strand, within CA264_00445at 96.090 kb on + strand, within CA264_00445at 96.090 kb on + strand, within CA264_00445at 96.091 kb on - strand, within CA264_00445at 96.091 kb on - strand, within CA264_00445at 96.091 kb on - strand, within CA264_00445at 96.154 kb on - strand, within CA264_00445at 96.243 kb on + strand, within CA264_00445at 96.559 kb on + strand, within CA264_00445at 96.583 kb on + strand, within CA264_00445at 96.584 kb on - strand, within CA264_00445at 96.641 kb on - strand, within CA264_00445at 96.715 kb on + strand, within CA264_00445at 96.715 kb on + strand, within CA264_00445at 96.716 kb on - strand, within CA264_00445at 96.716 kb on - strand, within CA264_00445at 96.716 kb on - strand, within CA264_00445at 96.742 kb on + strand, within CA264_00445at 96.749 kb on - strand, within CA264_00445at 96.793 kb on + strand, within CA264_00445at 96.793 kb on + strand, within CA264_00445at 96.794 kb on - strand, within CA264_00445at 96.805 kb on + strand, within CA264_00445at 96.805 kb on + strand, within CA264_00445at 96.805 kb on + strand, within CA264_00445at 96.805 kb on + strand, within CA264_00445at 96.806 kb on - strand, within CA264_00445at 96.806 kb on - strand, within CA264_00445at 96.824 kb on + strand, within CA264_00445at 96.879 kb on + strand, within CA264_00445at 96.952 kb on + strand, within CA264_00445at 97.057 kb on - strand, within CA264_00445at 97.186 kb on + strand, within CA264_00445at 97.204 kb on + strand, within CA264_00445at 97.205 kb on - strand, within CA264_00445at 97.205 kb on - strand, within CA264_00445at 97.321 kb on + strandat 97.321 kb on + strandat 97.322 kb on - strandat 97.322 kb on - strandat 97.323 kb on + strandat 97.324 kb on - strandat 97.371 kb on - strandat 97.485 kb on + strandat 97.485 kb on + strandat 97.486 kb on - strandat 97.551 kb on - strandat 97.551 kb on - strandat 97.552 kb on + strandat 97.552 kb on + strandat 97.621 kb on + strandat 97.622 kb on - strandat 97.629 kb on + strandat 97.630 kb on - strandat 97.659 kb on + strandat 97.660 kb on - strandat 97.683 kb on - strandat 98.514 kb on + strand, within CA264_00455

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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94,808 + -0.1
94,808 + -0.0
94,919 + +0.3
94,926 + -0.1
94,947 + -0.2
94,948 - +3.2
94,971 + -0.6
94,972 - +0.1
94,974 - -0.7
94,977 + -0.4
94,977 + -0.2
94,977 + -0.6
94,978 - -0.6
94,978 - -0.4
95,075 + -1.4
95,076 - +1.4
95,177 - -0.9
95,180 + -0.5
95,181 - +0.6
95,226 - +0.4
95,256 - -0.6
95,291 - -0.9
95,310 + +0.0
95,401 + -0.7
95,401 + +0.2
95,402 - -1.3
95,402 - -1.0
95,402 - -0.1
95,412 + -0.6
95,424 + -0.9
95,510 - -0.4
95,534 - -0.9
95,624 + -0.0
95,625 - +0.5
95,662 + -0.3
95,663 - -0.6
95,683 + -0.8
95,684 - -0.2
95,684 - -0.1
95,684 - -1.1
95,694 - -0.8
95,694 - +0.2
95,729 - CA264_00445 0.10 -0.6
95,731 + CA264_00445 0.10 -0.2
95,731 + CA264_00445 0.10 -0.2
95,731 + CA264_00445 0.10 -0.3
95,743 - CA264_00445 0.11 +0.2
95,743 - CA264_00445 0.11 +1.0
95,779 + CA264_00445 0.13 -0.5
95,831 - CA264_00445 0.15 -0.4
95,959 + CA264_00445 0.22 -0.3
95,964 + CA264_00445 0.22 -0.4
95,964 + CA264_00445 0.22 -1.0
96,079 + CA264_00445 0.28 +0.7
96,079 + CA264_00445 0.28 +0.4
96,080 - CA264_00445 0.28 -0.1
96,080 - CA264_00445 0.28 -0.9
96,080 - CA264_00445 0.28 -0.7
96,090 + CA264_00445 0.28 -1.2
96,090 + CA264_00445 0.28 +0.7
96,091 - CA264_00445 0.28 -1.8
96,091 - CA264_00445 0.28 -0.4
96,091 - CA264_00445 0.28 -0.3
96,154 - CA264_00445 0.31 -0.6
96,243 + CA264_00445 0.36 +0.0
96,559 + CA264_00445 0.52 +0.4
96,583 + CA264_00445 0.53 -0.9
96,584 - CA264_00445 0.53 -1.0
96,641 - CA264_00445 0.56 -1.6
96,715 + CA264_00445 0.60 -1.2
96,715 + CA264_00445 0.60 +0.5
96,716 - CA264_00445 0.60 -0.4
96,716 - CA264_00445 0.60 -0.8
96,716 - CA264_00445 0.60 +0.1
96,742 + CA264_00445 0.61 +0.2
96,749 - CA264_00445 0.61 -0.3
96,793 + CA264_00445 0.64 -0.1
96,793 + CA264_00445 0.64 -0.6
96,794 - CA264_00445 0.64 -0.4
96,805 + CA264_00445 0.64 -0.2
96,805 + CA264_00445 0.64 -0.2
96,805 + CA264_00445 0.64 -0.3
96,805 + CA264_00445 0.64 -0.1
96,806 - CA264_00445 0.64 -0.2
96,806 - CA264_00445 0.64 +0.9
96,824 + CA264_00445 0.65 +0.5
96,879 + CA264_00445 0.68 -1.2
96,952 + CA264_00445 0.72 -0.4
97,057 - CA264_00445 0.77 +0.1
97,186 + CA264_00445 0.83 +0.5
97,204 + CA264_00445 0.84 +0.1
97,205 - CA264_00445 0.84 -1.6
97,205 - CA264_00445 0.84 -0.8
97,321 + +0.3
97,321 + +0.1
97,322 - +0.1
97,322 - +0.6
97,323 + -0.5
97,324 - -0.3
97,371 - -0.3
97,485 + -0.3
97,485 + +0.2
97,486 - -0.6
97,551 - +0.1
97,551 - -0.5
97,552 + -1.1
97,552 + -0.6
97,621 + +0.6
97,622 - -1.1
97,629 + -0.1
97,630 - +0.1
97,659 + +1.2
97,660 - -0.3
97,683 - -0.8
98,514 + CA264_00455 0.22 +0.3

Or see this region's nucleotide sequence