Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00375

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00365 and CA264_00370 are separated by 223 nucleotidesCA264_00370 and CA264_00375 are separated by 138 nucleotidesCA264_00375 and CA264_00380 are separated by 58 nucleotidesCA264_00380 and CA264_00385 are separated by 180 nucleotides CA264_00365: CA264_00365 - 3-deoxy-D-manno-octulosonic acid transferase, at 82,534 to 83,775 _00365 CA264_00370: CA264_00370 - hypothetical protein, at 83,999 to 84,394 _00370 CA264_00375: CA264_00375 - hypothetical protein, at 84,533 to 85,006 _00375 CA264_00380: CA264_00380 - hypothetical protein, at 85,065 to 85,520 _00380 CA264_00385: CA264_00385 - hypothetical protein, at 85,701 to 86,570 _00385 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 83.767 kb on + strandat 83.768 kb on - strandat 83.779 kb on + strandat 83.789 kb on + strandat 83.790 kb on - strandat 83.790 kb on - strandat 83.843 kb on + strandat 83.844 kb on - strandat 83.844 kb on - strandat 83.863 kb on + strandat 83.863 kb on + strandat 83.864 kb on - strandat 83.932 kb on + strandat 83.933 kb on - strandat 83.942 kb on - strandat 83.974 kb on - strandat 83.985 kb on - strandat 83.987 kb on - strandat 84.009 kb on + strandat 84.011 kb on + strandat 84.011 kb on + strandat 84.011 kb on + strandat 84.011 kb on + strandat 84.012 kb on - strandat 84.046 kb on + strand, within CA264_00370at 84.046 kb on + strand, within CA264_00370at 84.046 kb on + strand, within CA264_00370at 84.047 kb on - strand, within CA264_00370at 84.141 kb on + strand, within CA264_00370at 84.142 kb on - strand, within CA264_00370at 84.142 kb on - strand, within CA264_00370at 84.158 kb on - strand, within CA264_00370at 84.160 kb on - strand, within CA264_00370at 84.166 kb on + strand, within CA264_00370at 84.167 kb on - strand, within CA264_00370at 84.169 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.281 kb on + strand, within CA264_00370at 84.283 kb on + strand, within CA264_00370at 84.292 kb on + strand, within CA264_00370at 84.319 kb on - strand, within CA264_00370at 84.322 kb on - strand, within CA264_00370at 84.392 kb on + strandat 84.393 kb on - strandat 84.432 kb on + strandat 84.437 kb on + strandat 84.451 kb on + strandat 84.453 kb on + strandat 84.489 kb on + strandat 84.522 kb on + strandat 84.549 kb on + strandat 84.550 kb on - strandat 84.558 kb on + strandat 84.558 kb on + strandat 84.571 kb on + strandat 84.585 kb on + strand, within CA264_00375at 84.598 kb on + strand, within CA264_00375at 84.666 kb on + strand, within CA264_00375at 84.667 kb on - strand, within CA264_00375at 84.720 kb on + strand, within CA264_00375at 84.721 kb on - strand, within CA264_00375at 84.750 kb on + strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.773 kb on - strand, within CA264_00375at 84.778 kb on + strand, within CA264_00375at 84.784 kb on + strand, within CA264_00375at 84.785 kb on - strand, within CA264_00375at 84.806 kb on - strand, within CA264_00375at 84.856 kb on - strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.862 kb on - strand, within CA264_00375at 84.865 kb on + strand, within CA264_00375at 84.866 kb on - strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.933 kb on - strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.952 kb on + strand, within CA264_00375at 85.004 kb on + strandat 85.005 kb on - strandat 85.005 kb on - strandat 85.105 kb on + strandat 85.107 kb on + strandat 85.108 kb on - strandat 85.128 kb on + strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.135 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.224 kb on + strand, within CA264_00380at 85.249 kb on - strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.304 kb on + strand, within CA264_00380at 85.374 kb on + strand, within CA264_00380at 85.375 kb on - strand, within CA264_00380at 85.394 kb on + strand, within CA264_00380at 85.428 kb on + strand, within CA264_00380at 85.433 kb on - strand, within CA264_00380at 85.453 kb on + strand, within CA264_00380at 85.460 kb on + strand, within CA264_00380at 85.576 kb on - strandat 85.678 kb on + strandat 85.741 kb on + strandat 85.742 kb on - strandat 85.742 kb on - strandat 85.765 kb on - strandat 85.766 kb on + strandat 85.766 kb on + strandat 85.767 kb on - strandat 85.782 kb on + strandat 85.867 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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83,767 + +1.7
83,768 - -0.2
83,779 + +0.3
83,789 + -0.1
83,790 - +0.5
83,790 - +0.8
83,843 + -0.3
83,844 - +0.8
83,844 - +0.1
83,863 + -0.5
83,863 + +0.5
83,864 - +1.2
83,932 + -0.8
83,933 - -1.1
83,942 - -0.5
83,974 - +0.4
83,985 - -0.2
83,987 - -0.3
84,009 + +0.8
84,011 + -0.4
84,011 + +1.8
84,011 + -0.4
84,011 + +0.0
84,012 - -0.1
84,046 + CA264_00370 0.12 +0.6
84,046 + CA264_00370 0.12 -0.3
84,046 + CA264_00370 0.12 -0.8
84,047 - CA264_00370 0.12 -0.1
84,141 + CA264_00370 0.36 -0.5
84,142 - CA264_00370 0.36 +0.0
84,142 - CA264_00370 0.36 -0.1
84,158 - CA264_00370 0.40 -0.3
84,160 - CA264_00370 0.41 +0.0
84,166 + CA264_00370 0.42 +1.5
84,167 - CA264_00370 0.42 +0.1
84,169 - CA264_00370 0.43 +1.2
84,240 - CA264_00370 0.61 -0.6
84,240 - CA264_00370 0.61 -0.5
84,240 - CA264_00370 0.61 +0.2
84,240 - CA264_00370 0.61 -0.3
84,281 + CA264_00370 0.71 +0.7
84,283 + CA264_00370 0.72 -0.2
84,292 + CA264_00370 0.74 -0.5
84,319 - CA264_00370 0.81 -0.4
84,322 - CA264_00370 0.82 +0.6
84,392 + +0.2
84,393 - -0.3
84,432 + -1.0
84,437 + -1.1
84,451 + -0.6
84,453 + -0.2
84,489 + +0.2
84,522 + -0.6
84,549 + -2.0
84,550 - -0.1
84,558 + -1.0
84,558 + -0.7
84,571 + -1.5
84,585 + CA264_00375 0.11 +1.2
84,598 + CA264_00375 0.14 -0.2
84,666 + CA264_00375 0.28 -0.3
84,667 - CA264_00375 0.28 -0.6
84,720 + CA264_00375 0.39 -1.2
84,721 - CA264_00375 0.40 -1.9
84,750 + CA264_00375 0.46 -1.0
84,751 - CA264_00375 0.46 -0.3
84,751 - CA264_00375 0.46 -0.6
84,752 + CA264_00375 0.46 +0.8
84,752 + CA264_00375 0.46 -0.4
84,752 + CA264_00375 0.46 +0.4
84,753 - CA264_00375 0.46 -2.2
84,753 - CA264_00375 0.46 +1.2
84,773 - CA264_00375 0.51 +0.3
84,778 + CA264_00375 0.52 -0.2
84,784 + CA264_00375 0.53 -0.6
84,785 - CA264_00375 0.53 -1.3
84,806 - CA264_00375 0.58 -0.4
84,856 - CA264_00375 0.68 -0.1
84,861 + CA264_00375 0.69 -0.7
84,861 + CA264_00375 0.69 +0.2
84,861 + CA264_00375 0.69 -0.7
84,861 + CA264_00375 0.69 +0.0
84,862 - CA264_00375 0.69 +1.2
84,865 + CA264_00375 0.70 +0.0
84,866 - CA264_00375 0.70 -0.0
84,896 + CA264_00375 0.77 +0.2
84,896 + CA264_00375 0.77 +0.2
84,896 + CA264_00375 0.77 -0.5
84,932 + CA264_00375 0.84 +0.4
84,932 + CA264_00375 0.84 -0.5
84,933 - CA264_00375 0.84 -0.4
84,949 + CA264_00375 0.88 -0.6
84,949 + CA264_00375 0.88 -0.4
84,952 + CA264_00375 0.88 -0.0
85,004 + +1.2
85,005 - -0.9
85,005 - -0.1
85,105 + -0.2
85,107 + -0.3
85,108 - +0.9
85,128 + CA264_00380 0.14 +1.2
85,129 - CA264_00380 0.14 -0.7
85,129 - CA264_00380 0.14 -0.3
85,135 + CA264_00380 0.15 +0.3
85,189 + CA264_00380 0.27 -0.5
85,189 + CA264_00380 0.27 -0.8
85,189 + CA264_00380 0.27 -0.6
85,189 + CA264_00380 0.27 -1.2
85,189 + CA264_00380 0.27 -1.0
85,190 - CA264_00380 0.27 -1.3
85,190 - CA264_00380 0.27 +1.1
85,190 - CA264_00380 0.27 +0.2
85,224 + CA264_00380 0.35 -0.3
85,249 - CA264_00380 0.40 -0.7
85,275 + CA264_00380 0.46 +0.2
85,275 + CA264_00380 0.46 -0.3
85,304 + CA264_00380 0.52 -0.6
85,374 + CA264_00380 0.68 -0.8
85,375 - CA264_00380 0.68 -0.4
85,394 + CA264_00380 0.72 +0.1
85,428 + CA264_00380 0.80 -0.0
85,433 - CA264_00380 0.81 -0.3
85,453 + CA264_00380 0.85 -0.3
85,460 + CA264_00380 0.87 +0.7
85,576 - +0.1
85,678 + -0.7
85,741 + -0.9
85,742 - -0.8
85,742 - -0.6
85,765 - -0.1
85,766 + +1.1
85,766 + -0.4
85,767 - +0.4
85,782 + -0.4
85,867 + CA264_00385 0.19 -1.9
85,905 + CA264_00385 0.23 +0.5
85,905 + CA264_00385 0.23 -1.1
85,905 + CA264_00385 0.23 -1.0
85,905 + CA264_00385 0.23 -0.2

Or see this region's nucleotide sequence