Experiment: Beta-alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3292 and Atu3293 are separated by 7 nucleotides Atu3293 and Atu3294 are separated by 49 nucleotides Atu3294 and Atu3295 are separated by 179 nucleotides
Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883
Atu3292
Atu3293: Atu3293 - D-amino acid dehydrogenase small subunit, at 318,891 to 320,147
Atu3293
Atu3294: Atu3294 - GntR family transcriptional regulator, at 320,197 to 320,907
Atu3294
Atu3295: Atu3295 - hypothetical protein, at 321,087 to 321,599
Atu3295
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 318.050 kb on + strand, within Atu3292 at 318.068 kb on - strand, within Atu3292 at 318.081 kb on + strand, within Atu3292 at 318.094 kb on - strand, within Atu3292 at 318.158 kb on - strand, within Atu3292 at 318.162 kb on + strand, within Atu3292 at 318.162 kb on + strand, within Atu3292 at 318.170 kb on - strand, within Atu3292 at 318.170 kb on - strand, within Atu3292 at 318.196 kb on + strand, within Atu3292 at 318.221 kb on + strand, within Atu3292 at 318.223 kb on - strand, within Atu3292 at 318.246 kb on + strand, within Atu3292 at 318.268 kb on + strand, within Atu3292 at 318.383 kb on + strand, within Atu3292 at 318.383 kb on + strand, within Atu3292 at 318.386 kb on - strand, within Atu3292 at 318.550 kb on + strand, within Atu3292 at 318.568 kb on - strand, within Atu3292 at 318.614 kb on + strand, within Atu3292 at 318.622 kb on - strand, within Atu3292 at 318.627 kb on - strand, within Atu3292 at 318.671 kb on + strand, within Atu3292 at 318.684 kb on - strand, within Atu3292 at 318.699 kb on - strand, within Atu3292 at 318.730 kb on + strand, within Atu3292 at 318.735 kb on + strand, within Atu3292 at 318.735 kb on + strand, within Atu3292 at 318.747 kb on + strand, within Atu3292 at 318.947 kb on + strand at 318.954 kb on + strand at 319.059 kb on + strand, within Atu3293 at 319.097 kb on + strand, within Atu3293 at 319.153 kb on + strand, within Atu3293 at 319.273 kb on - strand, within Atu3293 at 319.303 kb on - strand, within Atu3293 at 319.326 kb on - strand, within Atu3293 at 319.355 kb on - strand, within Atu3293 at 319.423 kb on + strand, within Atu3293 at 319.489 kb on + strand, within Atu3293 at 319.489 kb on + strand, within Atu3293 at 319.509 kb on - strand, within Atu3293 at 319.574 kb on + strand, within Atu3293 at 319.686 kb on - strand, within Atu3293 at 319.790 kb on + strand, within Atu3293 at 319.924 kb on + strand, within Atu3293 at 320.213 kb on + strand at 320.225 kb on + strand at 320.252 kb on - strand at 320.293 kb on + strand, within Atu3294 at 320.372 kb on + strand, within Atu3294 at 320.397 kb on - strand, within Atu3294 at 320.464 kb on - strand, within Atu3294 at 320.491 kb on - strand, within Atu3294 at 320.630 kb on - strand, within Atu3294 at 320.656 kb on - strand, within Atu3294 at 320.690 kb on + strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.714 kb on - strand, within Atu3294 at 320.733 kb on - strand, within Atu3294 at 320.735 kb on + strand, within Atu3294 at 320.743 kb on - strand, within Atu3294 at 320.743 kb on - strand, within Atu3294 at 320.745 kb on + strand, within Atu3294 at 320.895 kb on + strand at 320.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (N) remove 318,050 + Atu3292 0.29 -3.5 318,068 - Atu3292 0.30 -2.8 318,081 + Atu3292 0.31 -0.1 318,094 - Atu3292 0.32 -4.0 318,158 - Atu3292 0.38 -2.7 318,162 + Atu3292 0.38 -4.3 318,162 + Atu3292 0.38 -4.3 318,170 - Atu3292 0.39 -1.5 318,170 - Atu3292 0.39 -4.9 318,196 + Atu3292 0.41 -3.2 318,221 + Atu3292 0.43 -1.9 318,223 - Atu3292 0.43 -1.3 318,246 + Atu3292 0.45 -3.1 318,268 + Atu3292 0.47 -2.0 318,383 + Atu3292 0.57 -2.6 318,383 + Atu3292 0.57 -2.4 318,386 - Atu3292 0.57 -2.5 318,550 + Atu3292 0.71 -2.2 318,568 - Atu3292 0.73 -2.7 318,614 + Atu3292 0.77 -2.0 318,622 - Atu3292 0.78 -0.0 318,627 - Atu3292 0.78 -2.0 318,671 + Atu3292 0.82 -2.5 318,684 - Atu3292 0.83 -3.1 318,699 - Atu3292 0.84 -0.3 318,730 + Atu3292 0.87 -0.3 318,735 + Atu3292 0.87 -2.6 318,735 + Atu3292 0.87 -2.5 318,747 + Atu3292 0.88 -2.1 318,947 + -4.7 318,954 + -4.7 319,059 + Atu3293 0.13 -1.3 319,097 + Atu3293 0.16 -2.7 319,153 + Atu3293 0.21 -4.4 319,273 - Atu3293 0.30 -2.3 319,303 - Atu3293 0.33 -3.7 319,326 - Atu3293 0.35 -2.5 319,355 - Atu3293 0.37 -1.1 319,423 + Atu3293 0.42 -0.9 319,489 + Atu3293 0.48 -1.3 319,489 + Atu3293 0.48 -2.1 319,509 - Atu3293 0.49 -1.6 319,574 + Atu3293 0.54 -2.6 319,686 - Atu3293 0.63 -4.6 319,790 + Atu3293 0.72 -2.5 319,924 + Atu3293 0.82 -0.9 320,213 + +0.8 320,225 + -0.6 320,252 - +0.6 320,293 + Atu3294 0.14 -0.0 320,372 + Atu3294 0.25 +1.7 320,397 - Atu3294 0.28 +0.2 320,464 - Atu3294 0.38 -0.1 320,491 - Atu3294 0.41 -1.5 320,630 - Atu3294 0.61 -0.6 320,656 - Atu3294 0.65 +0.6 320,690 + Atu3294 0.69 -1.1 320,704 - Atu3294 0.71 -0.8 320,704 - Atu3294 0.71 +0.9 320,704 - Atu3294 0.71 -0.1 320,704 - Atu3294 0.71 +0.1 320,714 - Atu3294 0.73 -0.2 320,733 - Atu3294 0.75 +0.7 320,735 + Atu3294 0.76 -0.3 320,743 - Atu3294 0.77 -1.1 320,743 - Atu3294 0.77 -1.5 320,745 + Atu3294 0.77 +0.3 320,895 + +0.4 320,976 + +1.0
Or see this region's nucleotide sequence