Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_RNA74

Experiment: KB with Mitomycin C 0.05 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_RNA71 and Psyr_RNA72 are separated by 243 nucleotidesPsyr_RNA72 and Psyr_RNA73 are separated by 54 nucleotidesPsyr_RNA73 and Psyr_RNA74 are separated by 83 nucleotidesPsyr_RNA74 and Psyr_4565 are separated by 507 nucleotides Psyr_RNA71: Psyr_RNA71 - 23S ribosomal RNA, at 5,423,291 to 5,426,193 _RNA71 Psyr_RNA72: Psyr_RNA72 - tRNA-Ala, at 5,426,437 to 5,426,512 _RNA72 Psyr_RNA73: Psyr_RNA73 - tRNA-Ile, at 5,426,567 to 5,426,643 _RNA73 Psyr_RNA74: Psyr_RNA74 - 16S ribosomal RNA, at 5,426,727 to 5,428,264 _RNA74 Psyr_4565: Psyr_4565 - tyrosyl-tRNA synthetase, at 5,428,772 to 5,429,983 _4565 Position (kb) 5426 5427 5428 5429Strain fitness (log2 ratio) -2 -1 0 1at 5428.745 kb on + strandat 5428.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml
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5,428,745 + -1.1
5,428,745 + -2.6

Or see this region's nucleotide sequence