Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4613

Experiment: KB with Mitomycin C 0.05 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4612 and Psyr_4613 are separated by 11 nucleotidesPsyr_4613 and Psyr_4614 are separated by 77 nucleotides Psyr_4612: Psyr_4612 - Binding-protein-dependent transport systems inner membrane component, at 5,469,722 to 5,470,543 _4612 Psyr_4613: Psyr_4613 - Binding-protein-dependent transport systems inner membrane component, at 5,470,555 to 5,471,802 _4613 Psyr_4614: Psyr_4614 - extracellular solute-binding protein, family 1, at 5,471,880 to 5,472,914 _4614 Position (kb) 5470 5471 5472Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5469.574 kb on + strandat 5469.574 kb on + strandat 5469.575 kb on - strandat 5469.705 kb on + strandat 5469.705 kb on + strandat 5469.705 kb on + strandat 5469.705 kb on + strandat 5469.706 kb on - strandat 5469.706 kb on - strandat 5469.706 kb on - strandat 5469.706 kb on - strandat 5470.128 kb on + strand, within Psyr_4612at 5470.128 kb on + strand, within Psyr_4612at 5470.128 kb on + strand, within Psyr_4612at 5470.128 kb on + strand, within Psyr_4612at 5470.128 kb on + strand, within Psyr_4612at 5470.129 kb on - strand, within Psyr_4612at 5470.129 kb on - strand, within Psyr_4612at 5470.129 kb on - strand, within Psyr_4612at 5470.129 kb on - strand, within Psyr_4612at 5470.132 kb on + strand, within Psyr_4612at 5470.132 kb on + strand, within Psyr_4612at 5470.132 kb on + strand, within Psyr_4612at 5470.132 kb on + strand, within Psyr_4612at 5470.133 kb on - strand, within Psyr_4612at 5470.133 kb on - strand, within Psyr_4612at 5470.133 kb on - strand, within Psyr_4612at 5470.165 kb on - strand, within Psyr_4612at 5470.165 kb on - strand, within Psyr_4612at 5470.165 kb on - strand, within Psyr_4612at 5470.500 kb on + strandat 5470.500 kb on + strandat 5470.501 kb on - strandat 5470.501 kb on - strandat 5470.501 kb on - strandat 5470.504 kb on - strandat 5470.557 kb on - strandat 5470.594 kb on - strandat 5470.594 kb on - strandat 5470.594 kb on - strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.595 kb on + strandat 5470.596 kb on - strandat 5470.596 kb on - strandat 5470.596 kb on - strandat 5470.596 kb on - strandat 5470.596 kb on - strandat 5470.596 kb on - strandat 5470.679 kb on + strandat 5470.679 kb on + strandat 5470.680 kb on - strand, within Psyr_4613at 5470.694 kb on + strand, within Psyr_4613at 5470.694 kb on + strand, within Psyr_4613at 5470.694 kb on + strand, within Psyr_4613at 5470.695 kb on - strand, within Psyr_4613at 5470.695 kb on - strand, within Psyr_4613at 5470.695 kb on - strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.742 kb on + strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.743 kb on - strand, within Psyr_4613at 5470.746 kb on - strand, within Psyr_4613at 5470.797 kb on - strand, within Psyr_4613at 5470.811 kb on + strand, within Psyr_4613at 5470.811 kb on + strand, within Psyr_4613at 5470.811 kb on + strand, within Psyr_4613at 5470.811 kb on + strand, within Psyr_4613at 5470.811 kb on + strand, within Psyr_4613at 5470.812 kb on - strand, within Psyr_4613at 5470.812 kb on - strand, within Psyr_4613at 5470.868 kb on + strand, within Psyr_4613at 5470.868 kb on + strand, within Psyr_4613at 5470.868 kb on + strand, within Psyr_4613at 5470.868 kb on + strand, within Psyr_4613at 5470.868 kb on + strand, within Psyr_4613at 5470.869 kb on - strand, within Psyr_4613at 5470.898 kb on + strand, within Psyr_4613at 5470.899 kb on - strand, within Psyr_4613at 5470.899 kb on - strand, within Psyr_4613at 5470.899 kb on - strand, within Psyr_4613at 5470.899 kb on - strand, within Psyr_4613at 5470.899 kb on - strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.946 kb on + strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5470.947 kb on - strand, within Psyr_4613at 5471.144 kb on + strand, within Psyr_4613at 5471.145 kb on - strand, within Psyr_4613at 5471.145 kb on - strand, within Psyr_4613at 5471.157 kb on - strand, within Psyr_4613at 5471.226 kb on - strand, within Psyr_4613at 5471.226 kb on - strand, within Psyr_4613at 5471.300 kb on + strand, within Psyr_4613at 5471.300 kb on + strand, within Psyr_4613at 5471.322 kb on + strand, within Psyr_4613at 5471.322 kb on + strand, within Psyr_4613at 5471.323 kb on - strand, within Psyr_4613at 5471.323 kb on - strand, within Psyr_4613at 5471.391 kb on + strand, within Psyr_4613at 5471.391 kb on + strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.392 kb on - strand, within Psyr_4613at 5471.393 kb on + strand, within Psyr_4613at 5471.393 kb on + strand, within Psyr_4613at 5471.394 kb on - strand, within Psyr_4613at 5471.394 kb on - strand, within Psyr_4613at 5471.394 kb on - strand, within Psyr_4613at 5471.394 kb on - strand, within Psyr_4613at 5471.394 kb on - strand, within Psyr_4613at 5471.543 kb on + strand, within Psyr_4613at 5471.544 kb on - strand, within Psyr_4613at 5471.568 kb on + strand, within Psyr_4613at 5471.569 kb on - strand, within Psyr_4613at 5471.642 kb on + strand, within Psyr_4613at 5471.642 kb on + strand, within Psyr_4613at 5471.642 kb on + strand, within Psyr_4613at 5471.643 kb on - strand, within Psyr_4613at 5471.643 kb on - strand, within Psyr_4613at 5471.643 kb on - strand, within Psyr_4613at 5471.643 kb on - strand, within Psyr_4613at 5471.764 kb on - strandat 5471.881 kb on + strandat 5471.881 kb on + strandat 5471.882 kb on - strandat 5471.882 kb on - strandat 5471.882 kb on - strandat 5472.064 kb on + strand, within Psyr_4614at 5472.065 kb on - strand, within Psyr_4614at 5472.094 kb on + strand, within Psyr_4614at 5472.094 kb on + strand, within Psyr_4614at 5472.095 kb on - strand, within Psyr_4614at 5472.095 kb on - strand, within Psyr_4614at 5472.095 kb on - strand, within Psyr_4614at 5472.095 kb on - strand, within Psyr_4614at 5472.163 kb on + strand, within Psyr_4614at 5472.163 kb on + strand, within Psyr_4614at 5472.164 kb on - strand, within Psyr_4614at 5472.164 kb on - strand, within Psyr_4614at 5472.229 kb on + strand, within Psyr_4614at 5472.230 kb on - strand, within Psyr_4614at 5472.230 kb on - strand, within Psyr_4614at 5472.265 kb on + strand, within Psyr_4614at 5472.265 kb on + strand, within Psyr_4614at 5472.266 kb on - strand, within Psyr_4614at 5472.363 kb on + strand, within Psyr_4614at 5472.364 kb on - strand, within Psyr_4614at 5472.364 kb on - strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.370 kb on + strand, within Psyr_4614at 5472.371 kb on - strand, within Psyr_4614at 5472.371 kb on - strand, within Psyr_4614at 5472.371 kb on - strand, within Psyr_4614at 5472.371 kb on - strand, within Psyr_4614at 5472.421 kb on + strand, within Psyr_4614at 5472.421 kb on + strand, within Psyr_4614at 5472.421 kb on + strand, within Psyr_4614at 5472.421 kb on + strand, within Psyr_4614at 5472.421 kb on + strand, within Psyr_4614at 5472.422 kb on - strand, within Psyr_4614at 5472.422 kb on - strand, within Psyr_4614at 5472.422 kb on - strand, within Psyr_4614at 5472.422 kb on - strand, within Psyr_4614at 5472.521 kb on - strand, within Psyr_4614at 5472.521 kb on - strand, within Psyr_4614at 5472.736 kb on + strand, within Psyr_4614at 5472.736 kb on + strand, within Psyr_4614at 5472.737 kb on - strand, within Psyr_4614at 5472.737 kb on - strand, within Psyr_4614at 5472.737 kb on - strand, within Psyr_4614at 5472.784 kb on + strand, within Psyr_4614at 5472.784 kb on + strand, within Psyr_4614at 5472.784 kb on + strand, within Psyr_4614at 5472.784 kb on + strand, within Psyr_4614at 5472.785 kb on - strand, within Psyr_4614at 5472.785 kb on - strand, within Psyr_4614

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml
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5,469,574 + -0.2
5,469,574 + -0.6
5,469,575 - -1.5
5,469,705 + -2.6
5,469,705 + +1.3
5,469,705 + -3.9
5,469,705 + -0.9
5,469,706 - +4.4
5,469,706 - +3.2
5,469,706 - -0.5
5,469,706 - +0.6
5,470,128 + Psyr_4612 0.49 -1.8
5,470,128 + Psyr_4612 0.49 +2.8
5,470,128 + Psyr_4612 0.49 -2.2
5,470,128 + Psyr_4612 0.49 +1.1
5,470,128 + Psyr_4612 0.49 +0.2
5,470,129 - Psyr_4612 0.50 +2.2
5,470,129 - Psyr_4612 0.50 +2.7
5,470,129 - Psyr_4612 0.50 +1.8
5,470,129 - Psyr_4612 0.50 +1.5
5,470,132 + Psyr_4612 0.50 -2.0
5,470,132 + Psyr_4612 0.50 -0.7
5,470,132 + Psyr_4612 0.50 -0.5
5,470,132 + Psyr_4612 0.50 -0.8
5,470,133 - Psyr_4612 0.50 -2.6
5,470,133 - Psyr_4612 0.50 +0.8
5,470,133 - Psyr_4612 0.50 -2.0
5,470,165 - Psyr_4612 0.54 -3.9
5,470,165 - Psyr_4612 0.54 -0.9
5,470,165 - Psyr_4612 0.54 -1.3
5,470,500 + +0.2
5,470,500 + -0.7
5,470,501 - -1.6
5,470,501 - +0.2
5,470,501 - -1.4
5,470,504 - +3.4
5,470,557 - +0.4
5,470,594 - +0.2
5,470,594 - +0.0
5,470,594 - +0.4
5,470,595 + -0.0
5,470,595 + +4.6
5,470,595 + +0.1
5,470,595 + -2.5
5,470,595 + -0.6
5,470,595 + +0.1
5,470,595 + -1.8
5,470,596 - -0.4
5,470,596 - -1.4
5,470,596 - +0.8
5,470,596 - +0.4
5,470,596 - +0.7
5,470,596 - -0.1
5,470,679 + -3.0
5,470,679 + -3.2
5,470,680 - Psyr_4613 0.10 +3.6
5,470,694 + Psyr_4613 0.11 +3.2
5,470,694 + Psyr_4613 0.11 +0.0
5,470,694 + Psyr_4613 0.11 -2.5
5,470,695 - Psyr_4613 0.11 +0.8
5,470,695 - Psyr_4613 0.11 -0.9
5,470,695 - Psyr_4613 0.11 +1.8
5,470,742 + Psyr_4613 0.15 -0.4
5,470,742 + Psyr_4613 0.15 -2.2
5,470,742 + Psyr_4613 0.15 +0.0
5,470,742 + Psyr_4613 0.15 +2.1
5,470,742 + Psyr_4613 0.15 -1.0
5,470,742 + Psyr_4613 0.15 -2.0
5,470,742 + Psyr_4613 0.15 -0.9
5,470,742 + Psyr_4613 0.15 -0.7
5,470,742 + Psyr_4613 0.15 -0.9
5,470,742 + Psyr_4613 0.15 +0.1
5,470,742 + Psyr_4613 0.15 -1.9
5,470,743 - Psyr_4613 0.15 +0.8
5,470,743 - Psyr_4613 0.15 +0.7
5,470,743 - Psyr_4613 0.15 -0.4
5,470,743 - Psyr_4613 0.15 -2.2
5,470,743 - Psyr_4613 0.15 -0.4
5,470,743 - Psyr_4613 0.15 +3.2
5,470,743 - Psyr_4613 0.15 +0.5
5,470,743 - Psyr_4613 0.15 -1.0
5,470,743 - Psyr_4613 0.15 -3.4
5,470,743 - Psyr_4613 0.15 -1.3
5,470,743 - Psyr_4613 0.15 -0.9
5,470,743 - Psyr_4613 0.15 -1.3
5,470,746 - Psyr_4613 0.15 +0.8
5,470,797 - Psyr_4613 0.19 -0.6
5,470,811 + Psyr_4613 0.21 -0.2
5,470,811 + Psyr_4613 0.21 -0.2
5,470,811 + Psyr_4613 0.21 +2.4
5,470,811 + Psyr_4613 0.21 -0.6
5,470,811 + Psyr_4613 0.21 +0.3
5,470,812 - Psyr_4613 0.21 -1.8
5,470,812 - Psyr_4613 0.21 -1.4
5,470,868 + Psyr_4613 0.25 +2.8
5,470,868 + Psyr_4613 0.25 +3.2
5,470,868 + Psyr_4613 0.25 -0.3
5,470,868 + Psyr_4613 0.25 -1.9
5,470,868 + Psyr_4613 0.25 +0.8
5,470,869 - Psyr_4613 0.25 -2.4
5,470,898 + Psyr_4613 0.27 -1.2
5,470,899 - Psyr_4613 0.28 -0.8
5,470,899 - Psyr_4613 0.28 +1.0
5,470,899 - Psyr_4613 0.28 -0.2
5,470,899 - Psyr_4613 0.28 +1.8
5,470,899 - Psyr_4613 0.28 +0.5
5,470,946 + Psyr_4613 0.31 +1.3
5,470,946 + Psyr_4613 0.31 +0.8
5,470,946 + Psyr_4613 0.31 -0.2
5,470,946 + Psyr_4613 0.31 -3.4
5,470,946 + Psyr_4613 0.31 -2.0
5,470,946 + Psyr_4613 0.31 +0.3
5,470,946 + Psyr_4613 0.31 -0.3
5,470,946 + Psyr_4613 0.31 -0.3
5,470,946 + Psyr_4613 0.31 +0.0
5,470,946 + Psyr_4613 0.31 -0.9
5,470,946 + Psyr_4613 0.31 +1.6
5,470,946 + Psyr_4613 0.31 -2.3
5,470,946 + Psyr_4613 0.31 +0.8
5,470,946 + Psyr_4613 0.31 +3.4
5,470,947 - Psyr_4613 0.31 -2.0
5,470,947 - Psyr_4613 0.31 +3.6
5,470,947 - Psyr_4613 0.31 +4.2
5,470,947 - Psyr_4613 0.31 +0.0
5,470,947 - Psyr_4613 0.31 +0.3
5,470,947 - Psyr_4613 0.31 -1.8
5,470,947 - Psyr_4613 0.31 +2.4
5,470,947 - Psyr_4613 0.31 +1.3
5,471,144 + Psyr_4613 0.47 -1.3
5,471,145 - Psyr_4613 0.47 -0.9
5,471,145 - Psyr_4613 0.47 -0.6
5,471,157 - Psyr_4613 0.48 -0.3
5,471,226 - Psyr_4613 0.54 -1.0
5,471,226 - Psyr_4613 0.54 -2.5
5,471,300 + Psyr_4613 0.60 -1.8
5,471,300 + Psyr_4613 0.60 +0.1
5,471,322 + Psyr_4613 0.61 -1.0
5,471,322 + Psyr_4613 0.61 +4.3
5,471,323 - Psyr_4613 0.62 +0.1
5,471,323 - Psyr_4613 0.62 -0.4
5,471,391 + Psyr_4613 0.67 +0.5
5,471,391 + Psyr_4613 0.67 -4.3
5,471,392 - Psyr_4613 0.67 +0.7
5,471,392 - Psyr_4613 0.67 +0.8
5,471,392 - Psyr_4613 0.67 -0.9
5,471,392 - Psyr_4613 0.67 +0.8
5,471,392 - Psyr_4613 0.67 -1.5
5,471,392 - Psyr_4613 0.67 -1.8
5,471,392 - Psyr_4613 0.67 +0.5
5,471,392 - Psyr_4613 0.67 +4.4
5,471,392 - Psyr_4613 0.67 -0.4
5,471,393 + Psyr_4613 0.67 +3.4
5,471,393 + Psyr_4613 0.67 +1.3
5,471,394 - Psyr_4613 0.67 -1.3
5,471,394 - Psyr_4613 0.67 -1.7
5,471,394 - Psyr_4613 0.67 -0.7
5,471,394 - Psyr_4613 0.67 -1.4
5,471,394 - Psyr_4613 0.67 +2.8
5,471,543 + Psyr_4613 0.79 -2.3
5,471,544 - Psyr_4613 0.79 -2.7
5,471,568 + Psyr_4613 0.81 +0.2
5,471,569 - Psyr_4613 0.81 -2.0
5,471,642 + Psyr_4613 0.87 +0.6
5,471,642 + Psyr_4613 0.87 +3.2
5,471,642 + Psyr_4613 0.87 -1.3
5,471,643 - Psyr_4613 0.87 +3.2
5,471,643 - Psyr_4613 0.87 -0.5
5,471,643 - Psyr_4613 0.87 -1.4
5,471,643 - Psyr_4613 0.87 +2.5
5,471,764 - -1.0
5,471,881 + -2.1
5,471,881 + +0.2
5,471,882 - +2.2
5,471,882 - -0.3
5,471,882 - -1.0
5,472,064 + Psyr_4614 0.18 +1.8
5,472,065 - Psyr_4614 0.18 -1.0
5,472,094 + Psyr_4614 0.21 -1.1
5,472,094 + Psyr_4614 0.21 +0.8
5,472,095 - Psyr_4614 0.21 -0.3
5,472,095 - Psyr_4614 0.21 +1.3
5,472,095 - Psyr_4614 0.21 +0.2
5,472,095 - Psyr_4614 0.21 -0.0
5,472,163 + Psyr_4614 0.27 +1.2
5,472,163 + Psyr_4614 0.27 +0.0
5,472,164 - Psyr_4614 0.27 +1.8
5,472,164 - Psyr_4614 0.27 +1.6
5,472,229 + Psyr_4614 0.34 -1.9
5,472,230 - Psyr_4614 0.34 +1.2
5,472,230 - Psyr_4614 0.34 +4.4
5,472,265 + Psyr_4614 0.37 -3.1
5,472,265 + Psyr_4614 0.37 -2.5
5,472,266 - Psyr_4614 0.37 -0.5
5,472,363 + Psyr_4614 0.47 -1.8
5,472,364 - Psyr_4614 0.47 +1.1
5,472,364 - Psyr_4614 0.47 +0.6
5,472,370 + Psyr_4614 0.47 -0.4
5,472,370 + Psyr_4614 0.47 +0.8
5,472,370 + Psyr_4614 0.47 +0.6
5,472,370 + Psyr_4614 0.47 -1.5
5,472,370 + Psyr_4614 0.47 -0.2
5,472,370 + Psyr_4614 0.47 -2.2
5,472,371 - Psyr_4614 0.47 +1.0
5,472,371 - Psyr_4614 0.47 +0.8
5,472,371 - Psyr_4614 0.47 +4.5
5,472,371 - Psyr_4614 0.47 -2.5
5,472,421 + Psyr_4614 0.52 +3.8
5,472,421 + Psyr_4614 0.52 +2.4
5,472,421 + Psyr_4614 0.52 -1.1
5,472,421 + Psyr_4614 0.52 -1.2
5,472,421 + Psyr_4614 0.52 +0.2
5,472,422 - Psyr_4614 0.52 +0.8
5,472,422 - Psyr_4614 0.52 +0.8
5,472,422 - Psyr_4614 0.52 -0.9
5,472,422 - Psyr_4614 0.52 -1.8
5,472,521 - Psyr_4614 0.62 -2.0
5,472,521 - Psyr_4614 0.62 -0.6
5,472,736 + Psyr_4614 0.83 -0.8
5,472,736 + Psyr_4614 0.83 -0.8
5,472,737 - Psyr_4614 0.83 +2.4
5,472,737 - Psyr_4614 0.83 -0.3
5,472,737 - Psyr_4614 0.83 -1.8
5,472,784 + Psyr_4614 0.87 -1.2
5,472,784 + Psyr_4614 0.87 +3.8
5,472,784 + Psyr_4614 0.87 -0.1
5,472,784 + Psyr_4614 0.87 -1.2
5,472,785 - Psyr_4614 0.87 +1.1
5,472,785 - Psyr_4614 0.87 -0.6

Or see this region's nucleotide sequence