Experiment: KB with Mitomycin C 0.05 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4233 and Psyr_4234 are separated by 96 nucleotides Psyr_4234 and Psyr_4235 are separated by 257 nucleotides
Psyr_4233: Psyr_4233 - PhcA, at 5,041,254 to 5,042,810
_4233
Psyr_4234: Psyr_4234 - extracellular solute-binding protein, family 5, at 5,042,907 to 5,044,514
_4234
Psyr_4235: Psyr_4235 - extracellular solute-binding protein, family 5, at 5,044,772 to 5,046,400
_4235
Position (kb) 5042
5043
5044
5045 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5042.024 kb on + strand, within Psyr_4233 at 5042.024 kb on + strand, within Psyr_4233 at 5042.043 kb on - strand, within Psyr_4233 at 5042.147 kb on + strand, within Psyr_4233 at 5042.148 kb on - strand, within Psyr_4233 at 5042.196 kb on + strand, within Psyr_4233 at 5042.197 kb on - strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.391 kb on - strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.726 kb on + strand at 5042.808 kb on + strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.836 kb on - strand at 5042.843 kb on + strand at 5042.854 kb on + strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.891 kb on - strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5043.037 kb on - strand at 5043.168 kb on + strand, within Psyr_4234 at 5043.168 kb on + strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.303 kb on + strand, within Psyr_4234 at 5043.466 kb on - strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.585 kb on - strand, within Psyr_4234 at 5043.591 kb on + strand, within Psyr_4234 at 5043.592 kb on - strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.790 kb on - strand, within Psyr_4234 at 5043.880 kb on - strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.191 kb on + strand, within Psyr_4234 at 5044.191 kb on + strand, within Psyr_4234 at 5044.208 kb on + strand, within Psyr_4234 at 5044.242 kb on + strand, within Psyr_4234 at 5044.243 kb on - strand, within Psyr_4234 at 5044.272 kb on + strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.356 kb on + strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.486 kb on - strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.513 kb on - strand at 5044.606 kb on + strand at 5044.618 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.708 kb on + strand at 5044.709 kb on - strand at 5044.709 kb on - strand at 5044.742 kb on + strand at 5044.901 kb on + strand at 5044.901 kb on + strand at 5044.913 kb on - strand at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.078 kb on + strand, within Psyr_4235 at 5045.078 kb on + strand, within Psyr_4235 at 5045.186 kb on + strand, within Psyr_4235 at 5045.330 kb on + strand, within Psyr_4235 at 5045.330 kb on + strand, within Psyr_4235 at 5045.331 kb on - strand, within Psyr_4235 at 5045.414 kb on + strand, within Psyr_4235
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml remove 5,042,024 + Psyr_4233 0.49 +4.7 5,042,024 + Psyr_4233 0.49 +0.0 5,042,043 - Psyr_4233 0.51 -0.0 5,042,147 + Psyr_4233 0.57 -2.1 5,042,148 - Psyr_4233 0.57 +0.7 5,042,196 + Psyr_4233 0.61 +0.9 5,042,197 - Psyr_4233 0.61 +0.0 5,042,265 + Psyr_4233 0.65 +0.8 5,042,265 + Psyr_4233 0.65 -0.8 5,042,391 - Psyr_4233 0.73 -0.8 5,042,497 + Psyr_4233 0.80 +2.4 5,042,497 + Psyr_4233 0.80 -0.0 5,042,497 + Psyr_4233 0.80 -0.5 5,042,497 + Psyr_4233 0.80 +0.2 5,042,498 - Psyr_4233 0.80 +0.3 5,042,726 + -0.7 5,042,808 + +0.4 5,042,809 - -0.9 5,042,809 - -0.5 5,042,809 - -0.4 5,042,809 - +3.2 5,042,809 - -2.0 5,042,809 - -0.1 5,042,809 - +2.9 5,042,809 - -0.1 5,042,809 - -1.0 5,042,814 + +0.6 5,042,814 + +1.9 5,042,814 + +0.9 5,042,814 + +0.1 5,042,815 - +1.1 5,042,815 - -1.1 5,042,815 - -1.5 5,042,836 - -2.6 5,042,843 + -0.4 5,042,854 + +1.1 5,042,855 - -0.5 5,042,855 - +0.0 5,042,855 - -2.4 5,042,891 - -0.2 5,042,994 + +3.4 5,042,994 + -0.4 5,042,994 + -0.2 5,042,994 + -2.6 5,042,995 - -0.7 5,042,995 - +0.1 5,042,995 - -0.8 5,042,995 - -0.1 5,042,995 - -2.1 5,042,995 - -0.8 5,042,995 - +1.2 5,043,037 - +2.4 5,043,168 + Psyr_4234 0.16 +0.6 5,043,168 + Psyr_4234 0.16 -2.3 5,043,169 - Psyr_4234 0.16 +3.4 5,043,169 - Psyr_4234 0.16 -2.1 5,043,169 - Psyr_4234 0.16 -2.1 5,043,169 - Psyr_4234 0.16 +0.0 5,043,213 + Psyr_4234 0.19 +2.4 5,043,213 + Psyr_4234 0.19 +2.4 5,043,213 + Psyr_4234 0.19 +1.8 5,043,303 + Psyr_4234 0.25 -0.7 5,043,466 - Psyr_4234 0.35 -1.7 5,043,573 + Psyr_4234 0.41 -0.1 5,043,573 + Psyr_4234 0.41 -1.9 5,043,585 - Psyr_4234 0.42 +2.7 5,043,591 + Psyr_4234 0.43 -1.3 5,043,592 - Psyr_4234 0.43 +1.2 5,043,789 + Psyr_4234 0.55 -0.7 5,043,789 + Psyr_4234 0.55 +0.1 5,043,789 + Psyr_4234 0.55 -0.7 5,043,790 - Psyr_4234 0.55 +2.2 5,043,880 - Psyr_4234 0.61 +2.9 5,044,134 + Psyr_4234 0.76 +3.3 5,044,134 + Psyr_4234 0.76 -0.7 5,044,134 + Psyr_4234 0.76 +1.6 5,044,135 - Psyr_4234 0.76 -1.1 5,044,149 + Psyr_4234 0.77 -3.5 5,044,149 + Psyr_4234 0.77 +2.8 5,044,149 + Psyr_4234 0.77 -0.2 5,044,149 + Psyr_4234 0.77 -0.1 5,044,149 + Psyr_4234 0.77 -1.6 5,044,149 + Psyr_4234 0.77 +4.3 5,044,149 + Psyr_4234 0.77 -1.7 5,044,149 + Psyr_4234 0.77 -0.5 5,044,150 - Psyr_4234 0.77 +2.4 5,044,150 - Psyr_4234 0.77 -1.1 5,044,150 - Psyr_4234 0.77 +1.9 5,044,150 - Psyr_4234 0.77 -1.3 5,044,150 - Psyr_4234 0.77 -0.6 5,044,150 - Psyr_4234 0.77 +0.1 5,044,150 - Psyr_4234 0.77 -1.9 5,044,150 - Psyr_4234 0.77 +1.2 5,044,191 + Psyr_4234 0.80 -0.0 5,044,191 + Psyr_4234 0.80 +5.4 5,044,208 + Psyr_4234 0.81 +0.9 5,044,242 + Psyr_4234 0.83 -5.0 5,044,243 - Psyr_4234 0.83 +1.2 5,044,272 + Psyr_4234 0.85 -0.3 5,044,273 - Psyr_4234 0.85 -2.1 5,044,273 - Psyr_4234 0.85 -1.1 5,044,356 + -0.8 5,044,357 - +0.3 5,044,357 - +2.4 5,044,357 - -0.5 5,044,357 - +5.5 5,044,357 - +0.9 5,044,485 + +1.4 5,044,485 + +0.7 5,044,485 + +0.2 5,044,485 + -0.4 5,044,485 + +1.0 5,044,486 - -1.3 5,044,512 + -0.3 5,044,512 + +0.4 5,044,512 + -1.2 5,044,513 - -0.4 5,044,606 + -1.5 5,044,618 + -0.4 5,044,704 + -0.9 5,044,704 + +0.9 5,044,704 + -1.3 5,044,704 + +0.2 5,044,704 + +0.9 5,044,704 + +3.2 5,044,705 - +4.9 5,044,705 - -0.9 5,044,705 - -2.0 5,044,705 - +3.4 5,044,705 - -2.9 5,044,705 - +0.5 5,044,705 - -4.0 5,044,705 - +2.0 5,044,705 - -0.8 5,044,705 - +0.0 5,044,708 + +4.2 5,044,709 - +5.6 5,044,709 - -0.1 5,044,742 + +0.9 5,044,901 + -0.0 5,044,901 + -0.3 5,044,913 - +1.2 5,045,033 + Psyr_4235 0.16 -1.5 5,045,033 + Psyr_4235 0.16 +0.6 5,045,033 + Psyr_4235 0.16 -1.7 5,045,033 + Psyr_4235 0.16 -1.3 5,045,033 + Psyr_4235 0.16 -0.6 5,045,034 - Psyr_4235 0.16 -1.4 5,045,034 - Psyr_4235 0.16 +3.9 5,045,034 - Psyr_4235 0.16 +4.0 5,045,034 - Psyr_4235 0.16 +0.3 5,045,034 - Psyr_4235 0.16 +0.5 5,045,034 - Psyr_4235 0.16 +1.4 5,045,034 - Psyr_4235 0.16 +1.0 5,045,078 + Psyr_4235 0.19 -2.1 5,045,078 + Psyr_4235 0.19 -1.7 5,045,186 + Psyr_4235 0.25 +2.4 5,045,330 + Psyr_4235 0.34 -0.0 5,045,330 + Psyr_4235 0.34 -0.9 5,045,331 - Psyr_4235 0.34 -0.3 5,045,414 + Psyr_4235 0.39 +1.4
Or see this region's nucleotide sequence