Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4134

Experiment: KB with Mitomycin C 0.05 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4133 and Psyr_4134 are separated by 123 nucleotidesPsyr_4134 and Psyr_4135 are separated by 153 nucleotides Psyr_4133: Psyr_4133 - histidinol dehydrogenase, at 4,923,796 to 4,925,142 _4133 Psyr_4134: Psyr_4134 - ATP phosphoribosyltransferase (homohexameric), at 4,925,266 to 4,925,901 _4134 Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Position (kb) 4925 4926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.482 kb on + strand, within Psyr_4133at 4924.482 kb on + strand, within Psyr_4133at 4924.482 kb on + strand, within Psyr_4133at 4924.483 kb on - strand, within Psyr_4133at 4924.483 kb on - strand, within Psyr_4133at 4924.533 kb on - strand, within Psyr_4133at 4924.638 kb on + strand, within Psyr_4133at 4924.713 kb on - strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.799 kb on + strand, within Psyr_4133at 4924.800 kb on - strand, within Psyr_4133at 4924.800 kb on - strand, within Psyr_4133at 4924.800 kb on - strand, within Psyr_4133at 4925.156 kb on + strandat 4925.156 kb on + strandat 4925.157 kb on - strandat 4925.185 kb on + strandat 4925.185 kb on + strandat 4925.194 kb on - strandat 4925.492 kb on + strand, within Psyr_4134at 4925.492 kb on + strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.532 kb on - strand, within Psyr_4134at 4925.532 kb on - strand, within Psyr_4134at 4925.534 kb on + strand, within Psyr_4134at 4925.534 kb on + strand, within Psyr_4134at 4925.535 kb on - strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.911 kb on - strandat 4925.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml
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4,924,478 + Psyr_4133 0.51 +2.2
4,924,478 + Psyr_4133 0.51 -0.3
4,924,478 + Psyr_4133 0.51 -2.2
4,924,478 + Psyr_4133 0.51 -2.7
4,924,478 + Psyr_4133 0.51 -1.5
4,924,478 + Psyr_4133 0.51 -1.4
4,924,478 + Psyr_4133 0.51 +1.8
4,924,478 + Psyr_4133 0.51 -1.3
4,924,478 + Psyr_4133 0.51 -2.7
4,924,478 + Psyr_4133 0.51 -0.2
4,924,478 + Psyr_4133 0.51 -1.2
4,924,478 + Psyr_4133 0.51 -0.5
4,924,478 + Psyr_4133 0.51 +2.4
4,924,478 + Psyr_4133 0.51 -1.5
4,924,479 - Psyr_4133 0.51 +2.5
4,924,479 - Psyr_4133 0.51 -0.2
4,924,479 - Psyr_4133 0.51 -1.3
4,924,479 - Psyr_4133 0.51 +5.1
4,924,479 - Psyr_4133 0.51 +4.7
4,924,479 - Psyr_4133 0.51 +1.0
4,924,479 - Psyr_4133 0.51 -1.0
4,924,479 - Psyr_4133 0.51 -0.4
4,924,479 - Psyr_4133 0.51 -1.1
4,924,479 - Psyr_4133 0.51 -0.4
4,924,479 - Psyr_4133 0.51 +3.2
4,924,482 + Psyr_4133 0.51 +0.8
4,924,482 + Psyr_4133 0.51 +1.8
4,924,482 + Psyr_4133 0.51 -2.9
4,924,483 - Psyr_4133 0.51 -0.8
4,924,483 - Psyr_4133 0.51 +0.0
4,924,533 - Psyr_4133 0.55 -1.7
4,924,638 + Psyr_4133 0.63 +1.8
4,924,713 - Psyr_4133 0.68 -1.5
4,924,736 + Psyr_4133 0.70 -0.4
4,924,736 + Psyr_4133 0.70 -0.7
4,924,737 - Psyr_4133 0.70 -0.0
4,924,737 - Psyr_4133 0.70 +0.5
4,924,737 - Psyr_4133 0.70 -0.6
4,924,737 - Psyr_4133 0.70 +0.4
4,924,737 - Psyr_4133 0.70 +0.8
4,924,799 + Psyr_4133 0.74 -0.8
4,924,800 - Psyr_4133 0.75 -0.3
4,924,800 - Psyr_4133 0.75 +1.4
4,924,800 - Psyr_4133 0.75 -3.3
4,925,156 + +0.0
4,925,156 + -0.7
4,925,157 - +0.6
4,925,185 + -0.3
4,925,185 + -1.7
4,925,194 - +2.4
4,925,492 + Psyr_4134 0.36 +3.6
4,925,492 + Psyr_4134 0.36 -0.6
4,925,493 - Psyr_4134 0.36 -0.3
4,925,493 - Psyr_4134 0.36 +0.8
4,925,493 - Psyr_4134 0.36 +0.9
4,925,493 - Psyr_4134 0.36 -0.5
4,925,532 - Psyr_4134 0.42 +3.3
4,925,532 - Psyr_4134 0.42 -0.9
4,925,534 + Psyr_4134 0.42 -2.7
4,925,534 + Psyr_4134 0.42 -1.3
4,925,535 - Psyr_4134 0.42 +3.6
4,925,654 + Psyr_4134 0.61 +0.4
4,925,654 + Psyr_4134 0.61 +2.8
4,925,654 + Psyr_4134 0.61 +0.1
4,925,654 + Psyr_4134 0.61 +1.3
4,925,655 - Psyr_4134 0.61 -0.4
4,925,672 + Psyr_4134 0.64 +1.8
4,925,672 + Psyr_4134 0.64 -0.8
4,925,672 + Psyr_4134 0.64 -2.5
4,925,673 - Psyr_4134 0.64 -1.6
4,925,673 - Psyr_4134 0.64 +0.6
4,925,673 - Psyr_4134 0.64 -1.3
4,925,673 - Psyr_4134 0.64 +0.8
4,925,729 + Psyr_4134 0.73 -0.3
4,925,729 + Psyr_4134 0.73 -1.4
4,925,729 + Psyr_4134 0.73 +0.5
4,925,729 + Psyr_4134 0.73 -1.3
4,925,729 + Psyr_4134 0.73 +2.8
4,925,729 + Psyr_4134 0.73 -0.2
4,925,729 + Psyr_4134 0.73 -1.5
4,925,730 - Psyr_4134 0.73 +0.8
4,925,730 - Psyr_4134 0.73 +0.2
4,925,730 - Psyr_4134 0.73 +0.5
4,925,730 - Psyr_4134 0.73 -1.4
4,925,730 - Psyr_4134 0.73 -3.5
4,925,730 - Psyr_4134 0.73 -0.2
4,925,730 - Psyr_4134 0.73 +1.5
4,925,730 - Psyr_4134 0.73 +0.3
4,925,910 + +0.5
4,925,910 + +0.4
4,925,910 + -0.3
4,925,911 - -1.4
4,925,911 - +2.8

Or see this region's nucleotide sequence