Experiment: KB with Mitomycin C 0.05 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3954 and Psyr_3955 are separated by 171 nucleotides Psyr_3955 and Psyr_3956 are separated by 284 nucleotides
Psyr_3954: Psyr_3954 - GTP-binding protein LepA, at 4,700,728 to 4,702,524
_3954
Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141
_3955
Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385
_3956
Position (kb) 4702
4703
4704
4705 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4701.752 kb on - strand, within Psyr_3954 at 4701.909 kb on - strand, within Psyr_3954 at 4701.909 kb on - strand, within Psyr_3954 at 4702.260 kb on - strand, within Psyr_3954 at 4702.329 kb on - strand, within Psyr_3954 at 4702.329 kb on - strand, within Psyr_3954 at 4702.593 kb on - strand at 4702.612 kb on + strand at 4702.612 kb on + strand at 4702.710 kb on + strand at 4702.971 kb on + strand, within Psyr_3955 at 4702.972 kb on - strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.556 kb on + strand, within Psyr_3955 at 4703.750 kb on - strand, within Psyr_3955 at 4703.750 kb on - strand, within Psyr_3955 at 4703.776 kb on + strand, within Psyr_3955 at 4703.777 kb on - strand, within Psyr_3955 at 4703.777 kb on - strand, within Psyr_3955 at 4704.073 kb on - strand at 4704.117 kb on - strand at 4704.133 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.156 kb on + strand at 4704.172 kb on - strand at 4704.281 kb on + strand at 4704.281 kb on + strand at 4704.281 kb on + strand at 4704.282 kb on - strand at 4704.282 kb on - strand at 4704.284 kb on - strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.428 kb on - strand at 4704.428 kb on - strand at 4704.469 kb on - strand at 4704.469 kb on - strand at 4704.567 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.675 kb on - strand, within Psyr_3956 at 4704.983 kb on + strand, within Psyr_3956 at 4704.983 kb on + strand, within Psyr_3956 at 4704.984 kb on - strand, within Psyr_3956 at 4704.984 kb on - strand, within Psyr_3956 at 4705.034 kb on - strand, within Psyr_3956
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml remove 4,701,752 - Psyr_3954 0.57 -1.0 4,701,909 - Psyr_3954 0.66 -2.6 4,701,909 - Psyr_3954 0.66 -2.0 4,702,260 - Psyr_3954 0.85 -1.5 4,702,329 - Psyr_3954 0.89 +0.8 4,702,329 - Psyr_3954 0.89 -3.5 4,702,593 - -0.4 4,702,612 + +3.8 4,702,612 + -1.2 4,702,710 + +0.8 4,702,971 + Psyr_3955 0.19 -0.3 4,702,972 - Psyr_3955 0.19 -0.2 4,703,516 + Psyr_3955 0.57 -3.9 4,703,516 + Psyr_3955 0.57 -1.0 4,703,516 + Psyr_3955 0.57 -1.6 4,703,516 + Psyr_3955 0.57 +0.2 4,703,516 + Psyr_3955 0.57 -1.4 4,703,516 + Psyr_3955 0.57 -0.2 4,703,516 + Psyr_3955 0.57 -0.7 4,703,516 + Psyr_3955 0.57 -4.1 4,703,516 + Psyr_3955 0.57 -2.1 4,703,517 - Psyr_3955 0.57 -1.4 4,703,517 - Psyr_3955 0.57 +1.3 4,703,517 - Psyr_3955 0.57 -1.5 4,703,517 - Psyr_3955 0.57 +0.8 4,703,517 - Psyr_3955 0.57 -1.0 4,703,517 - Psyr_3955 0.57 -3.3 4,703,517 - Psyr_3955 0.57 -1.7 4,703,556 + Psyr_3955 0.59 -3.3 4,703,750 - Psyr_3955 0.73 -1.7 4,703,750 - Psyr_3955 0.73 +0.8 4,703,776 + Psyr_3955 0.75 -1.2 4,703,777 - Psyr_3955 0.75 -2.5 4,703,777 - Psyr_3955 0.75 -3.0 4,704,073 - -1.9 4,704,117 - +0.4 4,704,133 + -0.0 4,704,141 + -0.4 4,704,141 + -4.4 4,704,141 + -2.9 4,704,141 + -1.6 4,704,141 + -0.3 4,704,141 + -0.0 4,704,142 - -1.7 4,704,142 - -0.3 4,704,142 - +0.8 4,704,142 - +0.6 4,704,156 + -4.9 4,704,172 - -0.2 4,704,281 + +0.8 4,704,281 + +0.8 4,704,281 + -2.5 4,704,282 - +1.8 4,704,282 - +0.8 4,704,284 - -0.4 4,704,427 + -1.9 4,704,427 + +0.5 4,704,428 - -0.3 4,704,428 - -1.4 4,704,469 - -0.5 4,704,469 - -0.5 4,704,567 + Psyr_3956 0.15 +0.6 4,704,646 + Psyr_3956 0.23 -3.4 4,704,646 + Psyr_3956 0.23 +1.8 4,704,646 + Psyr_3956 0.23 +2.0 4,704,646 + Psyr_3956 0.23 -1.5 4,704,646 + Psyr_3956 0.23 +3.2 4,704,646 + Psyr_3956 0.23 +2.8 4,704,646 + Psyr_3956 0.23 -2.2 4,704,647 - Psyr_3956 0.23 -0.6 4,704,647 - Psyr_3956 0.23 -1.7 4,704,647 - Psyr_3956 0.23 +0.8 4,704,647 - Psyr_3956 0.23 -1.3 4,704,647 - Psyr_3956 0.23 -0.5 4,704,647 - Psyr_3956 0.23 +0.8 4,704,647 - Psyr_3956 0.23 -1.0 4,704,675 - Psyr_3956 0.26 +0.8 4,704,983 + Psyr_3956 0.58 +0.8 4,704,983 + Psyr_3956 0.58 -1.0 4,704,984 - Psyr_3956 0.58 +4.4 4,704,984 - Psyr_3956 0.58 +0.8 4,705,034 - Psyr_3956 0.63 +0.8
Or see this region's nucleotide sequence